1 #CFLAGS=-ftemplate-depth-20
2 CFLAGS=-O -Winline -ftemplate-depth-20
7 sequence.o : sequence.cc sequence.hh
8 g++ $(CFLAGS) -c sequence.cc
11 g++ $(CFLAGS) -c flp.cc
13 flp_seqcomp.o : flp_seqcomp.cc flp.hh
14 g++ $(CFLAGS) -c flp_seqcomp.cc
16 seqcomp : seqcomp.cc flp.o flp_seqcomp.o sequence.o
17 g++ $(CFLAGS) -o seqcomp seqcomp.cc flp.o flp_seqcomp.o sequence.o
19 mussa_nway.o : mussa_nway.cc mussa_nway.hh
20 g++ $(CFLAGS) -c mussa_nway.cc
22 mussa_gui_seq.o : mussa_gui_seq.cc mussa_gui_seq.hh
23 g++ $(CFLAGS) -c mussa_gui_seq.cc
25 mussa_gui_conn.o : mussa_gui_conn.cc mussa_gui_conn.hh
26 g++ $(CFLAGS) -c mussa_gui_conn.cc
28 mussa_class.o : mussa_class.cc mussa_class.hh
29 g++ $(CFLAGS) -c mussa_class.cc
31 mussa : sequence.o flp.o flp_seqcomp.o mussa_nway.o mussa_gui_seq.o mussa_gui_conn.o mussa_class.o mussa.cc
32 g++ $(CFLAGS) $(LDFLAGS) -o mussa mussa.cc mussa_class.o mussa_gui_conn.o mussa_gui_seq.o mussa_nway.o flp_seqcomp.o flp.o sequence.o
35 #match_list_type.o : modules/match_list_type.c modules/match_list_type.h \
36 # modules/seqcomp_defs.h
37 # gcc $(CFLAGS) -c modules/match_list_type.c
39 #match_list_head_type.o : modules/match_list_head_type.c \
40 # modules/match_list_head_type.h modules/seqcomp_defs.h
41 # gcc $(CFLAGS) -c modules/match_list_head_type.c
43 #result_type.o : modules/result_type.c modules/result_type.h \
44 # modules/seqcomp_defs.h
45 # gcc $(CFLAGS) -c modules/result_type.c
47 #compare.o : modules/compare.c modules/compare.h \
48 # modules/seqcomp_defs.h
49 # gcc $(CFLAGS) -c modules/compare.c
51 #seqcomp : seqcomp.c modules/seqcomp_defs.h sequence_type.o match_list_type.o \
52 # match_list_head_type.o result_type.o compare.o
53 # gcc $(LDFLAGS) -o seqcomp seqcomp.c sequence_type.o match_list_type.o \
54 # match_list_head_type.o result_type.o compare.o