alg/sequence_location.hpp

   1 #ifndef _SEQUENCE_LOCATION_H_
   2 #define _SEQUENCE_LOCATION_H_
   3
   4 #include <boost/shared_ptr.hpp>
   5 #include "alg/sequence.hpp"
   6
   7 //! convenience structure for holding selected track segments
   8 class SequenceLocation {
   9   public:
  10     typedef size_t size_type;
  11
  12     SequenceLocation(boost::shared_ptr<Sequence> s, int l, int r);
  13     SequenceLocation(const Sequence& s, int l, int r);
  14     SequenceLocation(const SequenceLocation& );
  15     SequenceLocation& operator=(const SequenceLocation&);
  16
  17     //! get the sequence we're selecting from
  18     const Sequence& getSequence() const;
  19     //! return the selected subsequence
  20     Sequence getSelectedSequence() const;
  21     void setLeft(int l);
  22     int getLeft() const;
  23     void setCount(size_type c);
  24     size_type getCount() const;
  25     //! set one past the right-most base
  26     void setRight(int r);
  27     int getRight() const;
  28
  29     //! return total length of region (alias for getCount())
  30     size_type size() const;
  31   private:
  32     boost::shared_ptr<Sequence> sequence;
  33     int left;
  34     int right;
  35   };
  36 #endif