1 // This file is part of the Mussa source distribution.
2 // http://mussa.caltech.edu/
3 // Contact author: Tristan De Buysscher, tristan@caltech.edu
5 // This program and all associated source code files are Copyright (C) 2005
6 // the California Institute of Technology, Pasadena, CA, 91125 USA. It is
7 // under the GNU Public License; please see the included LICENSE.txt
8 // file for more information, or contact Tristan directly.
11 #include "SeqWindow.hh"
20 set_align_cb(Fl_Widget* widg, void* the_data)
22 menu_align_data_bundle * blah = (menu_align_data_bundle *) the_data;
23 SeqWindow* T= blah->swm_ptr;
24 T->real_set_align_cb(blah->which_align);
29 SeqWindow::real_set_align_cb(int which_align)
31 seq_box->align_offsets(which_align);
37 show_align_cb(Fl_Widget* widg, void* the_data)
39 menu_align_data_bundle * blah = (menu_align_data_bundle *) the_data;
40 SeqWindow* T= blah->swm_ptr;
41 T->real_show_align_cb(blah->which_align);
46 SeqWindow::real_show_align_cb(int which_align)
53 seq_box->toggle_align(which_align);
59 toggle_bars_cb(Fl_Button* o, void* v)
61 SeqWindow* T=(SeqWindow*)v;
62 T->real_toggle_bars_cb();
67 SeqWindow::real_toggle_bars_cb()
69 seq_box->toggle_bars();
74 toggle_motifs_cb(Fl_Button* o, void* v)
76 SeqWindow* T=(SeqWindow*)v;
77 T->real_toggle_motifs_cb();
82 SeqWindow::real_toggle_motifs_cb()
84 seq_box->toggle_motifs();
88 // main code, window creation
90 SeqWindow::SeqWindow(int w, int h, const char* title, int sq_num,
91 vector<Sequence> *some_seqs,
92 list<ExtendedConservedPath > some_paths,
93 vector<int> some_lens,
94 vector<motif> *some_motifs):
95 Fl_Double_Window(w,h,title)
97 menu_align_data_bundle * some_menu_data;
98 int window_length, align_number;
100 ostringstream align_id_ostr;
101 string align_id_string;
102 list<ExtendedConservedPath >::iterator align_iter;
104 // most of this stuff is here just to pass to SeqView object
105 // some is needed to setup the window menus
109 seq_lens = some_lens;
110 the_motifs = some_motifs;
117 // make the menu that allows alignment selection
118 choose_align_menu = new Fl_Menu_Button(5, 2, 180, 30, "Choose Alignment");
119 choose_align_menu->color(FL_WHITE,FL_BLUE);
120 choose_align_menu->box(FL_BORDER_BOX);
121 choose_align_menu->clear();
123 // make the menu that allows alignment selection
124 show_align_menu = new Fl_Menu_Button(190, 2, 180, 30, "Show Alignment");
125 show_align_menu->color(FL_WHITE,FL_BLUE);
126 show_align_menu->box(FL_BORDER_BOX);
127 show_align_menu->clear();
130 // adds menu items for each path
131 align_iter = P.begin();
133 while(align_iter != P.end())
135 some_menu_data = new menu_align_data_bundle;
136 some_menu_data->swm_ptr = this;
137 some_menu_data->which_align = align_number;
138 align_id_ostr << (*align_iter)[0] << ": ";
139 for(i = 1; i <= seq_num; i++)
140 align_id_ostr << (*align_iter)[i] << ", ";
141 align_id_string = align_id_ostr.str();
142 choose_align_menu->add((const char*)align_id_string.c_str(), 0,
143 (Fl_Callback *) set_align_cb,
144 (void*) some_menu_data);
145 show_align_menu->add((const char*)align_id_string.c_str(), 0,
146 (Fl_Callback *) show_align_cb,
147 (void*) some_menu_data, FL_MENU_TOGGLE|FL_MENU_VALUE);
149 align_id_ostr.str("");
155 show_align_menu->add("f&ee");
156 show_align_menu->add("f&ie");
157 show_align_menu->add("f&oe");
158 show_align_menu->add("f&um");
161 Fl_Button *test_but = new Fl_Button(375, 2, 150, 30, "Toggle Motifs");
162 test_but->color(FL_WHITE,FL_BLUE);
163 test_but->box(FL_BORDER_BOX);
164 test_but->callback((Fl_Callback*) toggle_motifs_cb, this);
166 toggle_bars = new Fl_Button(530, 2, 150, 30, "Toggle 10bp bars");
167 toggle_bars->color(FL_WHITE,FL_BLUE);
168 toggle_bars->box(FL_BORDER_BOX);
169 toggle_bars->callback((Fl_Callback*) toggle_bars_cb, this);
172 // make the view of the sequence
173 seq_box = new SeqView(0, 34, w, h-34);
174 seq_box->setup(analysis_name, seq_num, S, P, seq_lens, the_motifs);
175 //real_set_align_cb(2);
178 Fl::visual(FL_DOUBLE|FL_INDEX);
185 some_menu_data = new menu_align_data_bundle;
186 some_menu_data->swm_ptr = this;
187 some_menu_data->which_align = 2;
188 choose_align_menu->add("f&ie", FL_ALT+'i', (Fl_Callback *) set_align_cb,
189 (void*) some_menu_data);
191 some_menu_data = new menu_align_data_bundle;
192 some_menu_data->swm_ptr = this;
193 some_menu_data->which_align = 3;
194 choose_align_menu->add("f&oe", FL_ALT+'o', (Fl_Callback *) set_align_cb,
195 (void*) some_menu_data);
197 some_menu_data = new menu_align_data_bundle;
198 some_menu_data->swm_ptr = this;
199 some_menu_data->which_align = 4;
200 choose_align_menu->add("f&um", FL_ALT+'u', (Fl_Callback *) set_align_cb,
201 (void*) some_menu_data);