mussa_class.hh

   1 //                        ----------------------------------------
   2 //                          ---------- mussa_class.hh -----------
   3 //                        ----------------------------------------
   4
   5 #include "mussa_gui_conn.hh"
   6
   7
   8 class Mussa
   9 {
  10   private:
  11     string ana_name;
  12     int seq_num, window, threshold;
  13     list<string> seq_files, annot_files;
  14     list<int> fasta_indices;
  15     bool win_append, thres_append;
  16
  17     vector<Sequence> the_Seqs;
  18     vector<vector<FLPs> > all_comps;
  19     Nway_Paths the_paths;
  20
  21   public:
  22     Mussa();
  23     void setup(char * para_file_path);
  24     void get_Seqs();
  25     void seqcomp();
  26     void nway();
  27     void save_old();
  28     void load_old(char * load_file_path, int s_num);
  29     void FuckingPieceOfShit(int x_max, int y_max);
  30 };
  31