mussa_gui_seq.cc

   1 #include "mussa_gui_seq.hh"
   2
   3
   4 void
   5 SeqView::setup(string name, int sq_num, int win_len,
   6                vector<Sequence> *some_seqs,
   7                Nway_Paths *some_paths, vector<int> some_lens)
   8 {
   9   ana_name = name;
  10   seq_num = sq_num;
  11   base_window_len = win_len;
  12   S = some_seqs;
  13   P = some_paths;
  14   seq_lens = some_lens;
  15
  16   y_seq_incre = (y_max-10) / (seq_num - 1);
  17
  18   fl_font(FL_COURIER, 14);
  19   cout << fl_width('A') << endl;
  20 }
  21
  22
  23 void
  24 SeqView::draw()
  25 {
  26   int seq_i;
  27   Sequence a_seq;
  28   int i, y_loc;
  29   vector<int> a_path;
  30   list<vector<int> >::iterator pathz_i;
  31   int i2;
  32   int x_start, y_start, x_end, y_end;
  33   double ch_width;
  34   int window_length, win_i;
  35   int rc_1 = 0;
  36   int rc_2 = 0;
  37
  38
  39   window_length = base_window_len;
  40   fl_font(FL_COURIER, 14);
  41   fl_color(FL_BLACK);
  42   //blatantly stolen from FR2
  43   ch_width = fl_width('A');     // monospaced: all characters are same width
  44
  45   y_loc = 10;
  46   for(seq_i = seq_num-1; seq_i >= 0; --seq_i)
  47   {
  48     //a_seq = a_seq;
  49     fl_draw((*S)[seq_i].c_seq(), 0+x(), y_loc+y());
  50     y_loc += y_seq_incre;
  51   }
  52
  53   fl_color(FL_RED);
  54   fl_line_style(FL_SOLID, 1, NULL);
  55   //fl_line(x(),10+y(),20+x(),y_max/2 + y());
  56
  57       //fl_color(FL_RED);
  58
  59
  60   for(pathz_i = P->pathz.begin(); pathz_i != P->pathz.end(); ++pathz_i)
  61   {
  62     a_path = *pathz_i;
  63     y_loc = 0;
  64     for(i2 = seq_num - 1; i2 > 0; i2--)
  65     {
  66       // RC case handling
  67
  68       // ugh, and xor...only want black if one of the nodes is rc
  69       if ( ((a_path[i2] < 0) || (a_path[i2-1] < 0)) &&
  70            !((a_path[i2] < 0) && (a_path[i2-1] < 0)) )
  71         fl_color(FL_BLUE);
  72
  73       // no matter the case, any RC node needs an offset
  74       if (a_path[i2] < 0)
  75         rc_1 = window_length;
  76       if (a_path[i2-1] < 0)
  77         rc_2 = window_length;
  78       // normal case
  79       for(win_i = 0; win_i < window_length; win_i++)
  80         fl_line(abs((int)((a_path[i2]-rc_1+win_i+x()+0.5)*ch_width)),
  81                 y_loc + 10+y(),
  82                 abs((int)((a_path[i2-1]-rc_2+win_i+x()+0.5)*ch_width)),
  83                 y_loc+y_seq_incre+y());
  84       y_loc += y_seq_incre;
  85       //if ((a_path[i2] < 0) || (a_path[i2-1] < 0))
  86       //{
  87         fl_color(FL_RED);
  88         rc_1 = 0;
  89         rc_2 = 0;
  90         //}
  91     }
  92   }
  93 }
  94 /*
  95       x_start = (int) ();
  96       y_start = ;
  97       x_end = (int) ();
  98       y_end = ;
  99       x_start,y_start,x_end,y_end
 100 */
 101
 102
 103 /*
 104       if ((a_path[i2] >= 0) && (a_path[i2-1] >= 0))
 105       {
 106       }
 107       else if ((a_path[i2] < 0) && (a_path[i2-1] < 0))
 108       {
 109         for(win_i = 0; win_i < window_length; win_i++)
 110           fl_line(abs((int)((a_path[i2]+window_length+win_i+x())*ch_width)),
 111                   y_loc + 10+y(),
 112                   abs((int)((a_path[i2-1]+window_length+win_i+x())*ch_width)),
 113                   y_loc+y_seq_incre+y());
 114
 115       }
 116       else
 117       {
 118         fl_color(FL_BLACK);
 119         for(win_i = 0; win_i < window_length; win_i++)
 120           fl_line(abs((int)((a_path[i2]+window_length+win_i+x())*ch_width)),
 121                   y_loc + 10+y(),
 122                   abs((int)((a_path[i2-1]+win_i+x())*ch_width)),
 123                   y_loc+y_seq_incre+y());
 124         fl_color(FL_RED);
 125       }
 126       else //
 127       {
 128         fl_color(FL_BLACK);
 129         for(win_i = 0; win_i < window_length; win_i++)
 130           fl_line(abs((int)((a_path[i2]+win_i+x())*ch_width)),
 131                   y_loc + 10+y(),
 132                   abs((int)((a_path[i2-1]+window_length+win_i+x())*ch_width)),
 133                   y_loc+y_seq_incre+y());
 134         fl_color(FL_RED);
 135       }
 136 */