mussa_nway.hh

   1 //                        ----------------------------------------
   2 //                         ----------  mussa_nway.hh  -----------
   3 //                        ----------------------------------------
   4
   5 #include "flp.hh"
   6
   7
   8 class Nway_Paths
   9 {
  10   friend class ConnView;
  11   friend class SeqView;
  12   private:
  13     int species_num;
  14     int threshold;
  15     int win_size;
  16     list<vector<int> > pathz;
  17
  18
  19   public:
  20     Nway_Paths();
  21     void setup(int sp_num);
  22     void find_paths_r(vector<vector<FLPs> > all_comparisons);
  23     void path_search(vector<vector<FLPs> > all_comparisons, vector<int> path, int depth);
  24     void save(string save_file_path);
  25     void save_old(string save_file_path);
  26     void load(string load_file_path);
  27     void add_path(vector<int> loaded_path);
  28     void find_paths(vector<vector<FLPs> > all_comparisons);
  29     void refine();
  30     void print();
  31
  32     list<vector<int> > scaled_paths(float scale_factor);
  33 };