[project @ 4]

[mussa.git] / Makefile

diff --git a/Makefile b/Makefile
index 580077ab60655408261c27e58920f1c280b2bb7b..7edccd2b458d63a0970848c613012af31dba36e4 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -1,7 +1,13 @@
 #CFLAGS=-ftemplate-depth-20
 CFLAGS=-O -Winline -ftemplate-depth-20
+# -ggdb
 LDFLAGS= -lfltk
 
+# this is what's needed on titus's redhat machine
+# tho he may have things setup oddly to accomodate his development setup 
+#LDFLAGS= -lfltk -L/usr/X11R6/lib -lX11
+
+
 #all: seqcomp
 
 sequence.o : sequence.cc sequence.hh
@@ -29,7 +35,12 @@ mussa_class.o : mussa_class.cc mussa_class.hh
        g++ $(CFLAGS) -c mussa_class.cc
 
 mussa : sequence.o flp.o flp_seqcomp.o mussa_nway.o mussa_gui_seq.o mussa_gui_conn.o mussa_class.o mussa.cc  
-       g++ $(CFLAGS) $(LDFLAGS) -o mussa mussa.cc mussa_class.o mussa_gui_conn.o mussa_gui_seq.o mussa_nway.o flp_seqcomp.o flp.o sequence.o
+       g++ $(CFLAGS) -o mussa mussa.cc mussa_class.o mussa_gui_conn.o mussa_gui_seq.o mussa_nway.o flp_seqcomp.o flp.o sequence.o  $(LDFLAGS)
+
+
+
+annot_test : sequence.o annot_test.cc
+       g++ $(CFLAGS) -o annot_test annot_test.cc sequence.o
 
 
 #match_list_type.o : modules/match_list_type.c modules/match_list_type.h \