remove annot class in favor of SeqSpan

[mussa.git] / alg / annotation_colors.hpp

diff --git a/alg/annotation_colors.hpp b/alg/annotation_colors.hpp
index eaabc1784635f84725c74d832c37d42df909be2a..26b56c93d8bcde5ddcebc9802205a52e24c6f302 100644 (file)
--- a/alg/annotation_colors.hpp
+++ b/alg/annotation_colors.hpp
@@ -4,6 +4,8 @@
 #include <map>
 #include <string>
 
+#include <boost/shared_ptr.hpp>
+
 #include "color.hpp"
 #include "sequence.hpp"
 
@@ -24,6 +26,9 @@ struct DefaultColorMap
   color_map_type cm;
 };
 
+class AnnotationColors;
+typedef boost::shared_ptr<AnnotationColors> AnnotationColorsRef;
+
 class AnnotationColors
 {
 public:
@@ -55,7 +60,6 @@ public:
   void erase(const std::string &type, const std::string& instance);
 
   //! lookup an annotation color
-  Color lookup(const annot &) const;
   Color lookup(const std::string &, const std::string &) const;
 private:
   // nested maps, with default?