void seqcomp(const Sequence& seq1, const Sequence& seq2, bool is_RC);
//bool FLPs::match_less(match *match1, match *match2);
//void FLPs::sort();
- //! Return all the matches for a particular window?
+ //! Return all the matches for a particular window? (index and score pairs)
std::list<match> matches(int index) const;
//! Return all the match indexes for a particular window?
std::list<int> match_locations(int index) const;