int start_i, seq1_i, seq2_i, win_i; // loop variables
int matches; // number of matches in to a window
int i2_offset;
- const char *seq1 = sseq1.data();
- const char *seq2 = sseq2.data();
+ std::string sseq1_str(sseq1.get_sequence());
+ std::string sseq2_str(sseq2.get_sequence());
+ const char *seq1 = sseq1_str.c_str();
+ const char *seq2 = sseq2_str.c_str();
validate_sequence(sseq1);
validate_sequence(sseq2);