CURDIR := $(BASEDIR)alg/
-SOURCES.cxx := color.cxx \
- conserved_path.cxx \
- flp.cxx \
- flp_seqcomp.cxx \
- mussa_class.cxx \
- nway_paths.cxx \
- nway_entropy.cxx \
- nway_other.cxx \
- sequence.cxx
- # mussa_nway_refine.cxx (broken)
+SOURCES.cpp := color.cpp \
+ conserved_path.cpp \
+ flp.cpp \
+ flp_seqcomp.cpp \
+ mussa.cpp \
+ nway_paths.cpp \
+ nway_entropy.cpp \
+ nway_other.cpp \
+ sequence.cpp
+ # mussa_nway_refine.cpp (broken)
-MUSSA_ALG_SRC := $(addprefix $(CURDIR), $(SOURCES.cxx))
-MUSSA_ALG_OBJ := $(MUSSA_ALG_SRC:.cxx=$(OBJEXT))
+MUSSA_ALG_SRC := $(addprefix $(CURDIR), $(SOURCES.cpp))
+MUSSA_ALG_OBJ := $(MUSSA_ALG_SRC:.cpp=$(OBJEXT))
-GLSOURCES.cxx := glsequence.cxx
-MUSSA_ALG_GL_SRC := $(addprefix $(CURDIR), $(GLSOURCES.cxx))
-MUSSA_ALG_GL_OBJ := $(MUSSA_ALG_GL_SRC:.cxx=$(OBJEXT))
+GLSOURCES.cpp := glsequence.cpp
+MUSSA_ALG_GL_SRC := $(addprefix $(CURDIR), $(GLSOURCES.cpp))
+MUSSA_ALG_GL_OBJ := $(MUSSA_ALG_GL_SRC:.cpp=$(OBJEXT))
SRC += $(MUSSA_ALG_SRC) $(MUSSA_ALG_GL_SRC)
CXXFLAGS +=