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Move alphabet type into SeqString
[mussa.git]
/
alg
/
motif_parser.cpp
diff --git
a/alg/motif_parser.cpp
b/alg/motif_parser.cpp
index d05f15bbd55410ec1b2e76c94ce5114b6cb85a68..c59c2873e160d697ab46d2b08510d1d985f905cf 100644
(file)
--- a/
alg/motif_parser.cpp
+++ b/
alg/motif_parser.cpp
@@
-1,6
+1,7
@@
#include "mussa_exceptions.hpp"
#include "mussa_exceptions.hpp"
-#include "alg/alphabet.hpp"
-#include "alg/motif_parser.hpp"
+#include "alphabet.hpp"
+#include "motif_parser.hpp"
+#include "seq.hpp"
#include <boost/spirit/core.hpp>
#include <boost/spirit/actor/push_back_actor.hpp>
#include <boost/spirit/core.hpp>
#include <boost/spirit/actor/push_back_actor.hpp>
@@
-56,7
+57,7
@@
void motif_parser::push_motif::operator()(
Iterator end) const
{
float red, green, blue, alpha;
Iterator end) const
{
float red, green, blue, alpha;
- Sequence seq(parsed->sequence,
Sequence::
nucleic_alphabet);
+ Sequence seq(parsed->sequence, nucleic_alphabet);
seq.set_fasta_header(parsed->name);
alpha = 1.0;
seq.set_fasta_header(parsed->name);
alpha = 1.0;