}
-const vector<boost::shared_ptr<Sequence> >&
+const vector<SequenceRef>&
Mussa::sequences() const
{
return the_seqs;
void Mussa::load_motifs(std::istream &in)
{
std::string data;
- const char *alphabet = Alphabet::nucleic_cstr;
+ const char *alphabet = Alphabet::dna_cstr;
motif_parser::ParsedMotifs parsed_motifs(motif_sequences, color_mapper);
// slurp our data into a string