enum analysis_modes get_analysis_mode() const;
//! return a string name for an analysis mode
std::string get_analysis_mode_name() const;
+ //! return if we have unsaved changes
+ bool is_dirty() const { return dirty; }
//! return the refined paths found by the nway analysis.
const NwayPaths& paths() const;
std::set<Sequence> motif_sequences;
//! color manager
boost::shared_ptr<AnnotationColors> color_mapper;
+ //! flag indicating if we have unsaved changes
+ bool dirty;
// Private methods
//! runs all the seqcomps needed to support the nway comparison