recover threshold and window size

[mussa.git] / alg / nway_paths.hpp

diff --git a/alg/nway_paths.hpp b/alg/nway_paths.hpp
index 3e23f15c5bcd438e1c85aaca341ed42aaa4fdb54..f8337e22b5cd46ad0b31d00a3dfc100df4841fef 100644 (file)
--- a/alg/nway_paths.hpp
+++ b/alg/nway_paths.hpp
@@ -40,6 +40,10 @@ class NwayPaths
     void setup(int w, int t);
     void setup_ent(double new_entropy_thres, std::vector<std::string> some_Seqs);
     void set_soft_thres(int soft_thres);
+    //! return minimum threshold for this analysis
+    int get_threshold() const;
+    //! return window size used for this analysis
+    int get_window() const;
 
     void radiate_path_search(std::vector<std::vector<FLPs> > all_comparisons);
     void trans_path_search(std::vector<std::vector<FLPs> > all_comparisons);