make Sequence a subclass of std::string

[mussa.git] / alg / test / test_flp.cpp

diff --git a/alg/test/test_flp.cpp b/alg/test/test_flp.cpp
index 4706e8de6af5b46511f7d4f0cbd09887be8a974b..50c621843bf4c6e1a420fc56357351b445ea6325 100644 (file)
--- a/alg/test/test_flp.cpp
+++ b/alg/test/test_flp.cpp
@@ -88,13 +88,13 @@ BOOST_AUTO_TEST_CASE( flp_reverse_compliment )
   Sequence s1("AAAATTTT");
   Sequence s2("AACAGGGG");
   f1.setup(4,3);
-  f1.seqcomp(s1.get_seq(), s2.get_seq(), false);
-  f1.seqcomp(s1.get_seq(), s2.rev_comp(), true);
+  f1.seqcomp(s1, s2, false);
+  f1.seqcomp(s1, s2.rev_comp(), true);
 
   FLPs f2;
   f2.setup(4,3);
-  f2.seqcomp(s1.get_seq(), s2.rev_comp(), true);
-  f2.seqcomp(s1.get_seq(), s2.get_seq(), false);
+  f2.seqcomp(s1, s2.rev_comp(), true);
+  f2.seqcomp(s1, s2, false);
 
   // The order of doing the reverse compliment search shouldn't matter
   // when we're using exactly the same sequence