Mark real sequence instead of Ns

[mussa.git] / alg / test / test_glsequence.cpp

diff --git a/alg/test/test_glsequence.cpp b/alg/test/test_glsequence.cpp
index 0c00fb1271857e79c631ad0ab445600eaeacee85..120a3f6d238a664a55678f08bee4a4aa029704f8 100644 (file)
--- a/alg/test/test_glsequence.cpp
+++ b/alg/test/test_glsequence.cpp
@@ -74,18 +74,18 @@ BOOST_AUTO_TEST_CASE( glsequence_color )
   BOOST_CHECK_EQUAL( *(s.color()), *c );
 }
 
-BOOST_AUTO_TEST_CASE( glsequence_find_null_sequence )
+BOOST_AUTO_TEST_CASE( glsequence_find_real_sequence )
 {
   boost::shared_ptr<AnnotationColors> cm(new AnnotationColors);
-  GlSequence s("AAAAAAAAAANNNNNANAN", cm);
+  GlSequence s("AAAAAAAAAANNNNNANNA", cm);
   //            0123456789012345678
-  s.add_annotations_for_undefined_sequence();
+  s.add_annotations_for_defined_sequence();
   
   BOOST_CHECK_EQUAL(s.annotations().size(), 3);
   std::vector<SeqSpanRef> annot(s.annotations().begin(), s.annotations().end());
-  BOOST_CHECK_EQUAL(annot[0]->start(), 10);
-  BOOST_CHECK_EQUAL(annot[0]->stop(), 15);
-  BOOST_CHECK_EQUAL(annot[1]->start(), 16);
+  BOOST_CHECK_EQUAL(annot[0]->start(), 0);
+  BOOST_CHECK_EQUAL(annot[0]->stop(), 10);
+  BOOST_CHECK_EQUAL(annot[1]->start(), 15);
   BOOST_CHECK_EQUAL(annot[1]->size(), 1);
   BOOST_CHECK_EQUAL(annot[2]->start(), 18);
   BOOST_CHECK_EQUAL(annot[2]->size(), 1);