+#define BOOST_AUTO_TEST_MAIN
#include <boost/test/auto_unit_test.hpp>
#include <boost/filesystem/path.hpp>
#include <boost/filesystem/operations.hpp>
BOOST_CHECK_THROW(m1.load_mupa_file( curdir ), mussa_load_error );
}
+// catch error if annotation isn't a file
+BOOST_AUTO_TEST_CASE( mussa_annotation_is_not_file )
+{
+ Mussa m1;
+ fs::path full_path(fs::path(EXAMPLE_DIR, fs::native) / "directory.mupa");
+ BOOST_CHECK_THROW( m1.load_mupa_file( full_path ), mussa_load_error );
+}
+
BOOST_AUTO_TEST_CASE( mussa_load_analysis )
{
fs::path example_dir(EXAMPLE_DIR, fs::native);
}
}
+BOOST_AUTO_TEST_CASE( mussa_window_larger_than_sequence )
+{
+ string s0("AGCAGGG");
+ string s1("CAGCGGG");
+
+ Mussa analysis;
+ analysis.append_sequence(s0);
+ analysis.append_sequence(s1);
+ analysis.set_threshold(23);
+ analysis.set_window(30);
+ BOOST_CHECK_THROW(analysis.analyze(), seqcomp_error);
+}
+
BOOST_AUTO_TEST_CASE( subanalysis )
{
Sequence s1("AATGAAGATTTTAATGCTTTAATTTTGTTTTGTAAACTTCGAATTTCCAAAATTTGAAA");