fixes for Mussa::load_motif

[mussa.git] / alg / test / test_mussa.cpp

diff --git a/alg/test/test_mussa.cpp b/alg/test/test_mussa.cpp
index 068d44b5015dabc7d35d5add142eb9b82909028e..ae16ee81fffcdb5dbd1317733a5a62dc76a4b72e 100644 (file)
--- a/alg/test/test_mussa.cpp
+++ b/alg/test/test_mussa.cpp
@@ -213,6 +213,20 @@ BOOST_AUTO_TEST_CASE( mussa_named_motif )
   BOOST_CHECK_EQUAL(motifs.begin()->get_name(), "cat");
 }
 
+BOOST_AUTO_TEST_CASE( mussa_weirdly_spaced_named_motif )
+{
+  string data = "CCAATT       cat_meow123     0.1    0.2 0.3\n";
+  istringstream test_istream(data);
+
+  Mussa m1;
+  m1.append_sequence("AAAAGGGGTTTT");
+  m1.append_sequence("GGGCCCCTTCCAATT");
+  m1.load_motifs(test_istream);
+
+  std::set<Sequence> motifs = m1.motifs();
+  BOOST_REQUIRE_EQUAL(motifs.size(), 1);
+  BOOST_CHECK_EQUAL(motifs.begin()->get_name(), "cat_meow123");
+}
 BOOST_AUTO_TEST_CASE( mussa_add_motif )
 {
   vector<Sequence> motifs;