finish implementing annotation by sequence

[mussa.git] / alg / test / test_sequence.cpp

diff --git a/alg/test/test_sequence.cpp b/alg/test/test_sequence.cpp
index 660f4df8fb7cdaf23a49fc852b2466d741e698bb..00369241fd58fa3ac1d11a578964d9b328afd8bf 100644 (file)
--- a/alg/test/test_sequence.cpp
+++ b/alg/test/test_sequence.cpp
@@ -75,21 +75,31 @@ BOOST_AUTO_TEST_CASE( annotation_load )
                       ">ident3 asdf\n"
                       "GCT\n"
                       "GCTN\n"
+                      "75\t90\tname2\ttype2\n"
                       ;
-  string s('A',100);
-  s += "GCTGCT";
+  string s(100, 'A');
+  s += "GCTGCTAATT";
   Sequence seq(s);
                      
   //istringstream annot_stream(annot_data);
   seq.parse_annot(annot_data, 0, 0);
   std::list<annot> annots_list = seq.annotations();
   std::vector<annot> annots(annots_list.begin(), annots_list.end());
-  BOOST_REQUIRE_EQUAL( annots.size(), 5);
+  BOOST_REQUIRE_EQUAL( annots.size(), 7);
   BOOST_CHECK_EQUAL( annots[0].start, 0 );
   BOOST_CHECK_EQUAL( annots[0].end, 10 );
-  //BOOST_CHECK_EQUAL( annots[0].type, "type");
+  BOOST_CHECK_EQUAL( annots[0].type, "type");
   BOOST_CHECK_EQUAL( annots[0].name, "name");
-  //BOOST_CHECK_EQUAL( annots[1].name, "myf7");
+  BOOST_CHECK_EQUAL( annots[1].name, "myf7");
+  BOOST_CHECK_EQUAL( annots[2].name, "myod");
+  BOOST_CHECK_EQUAL( annots[3].name, "anothername");
+  BOOST_CHECK_EQUAL( annots[4].name, "backward");
+  BOOST_CHECK_EQUAL( annots[5].name, "name2");
+  BOOST_CHECK_EQUAL( annots[5].end, 90);
+  // sequence defined annotations will always be after the
+  // absolute positions
+  BOOST_CHECK_EQUAL( annots[6].name, "ident3 asdf");
+  BOOST_CHECK_EQUAL( annots[6].start, 100);
 
   //BOOST_CHECK_EQUAL( annots
 }