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Mussagl Manual: Docs 1.0 (part 3)
[mussa.git]
/
doc
/
manual
/
mussagl_manual.rst
diff --git
a/doc/manual/mussagl_manual.rst
b/doc/manual/mussagl_manual.rst
index df5426f561d53b5469b21289cb9916d09c99e0cd..b980016da46a4b646aca913e529b67fde049c9c7 100644
(file)
--- a/
doc/manual/mussagl_manual.rst
+++ b/
doc/manual/mussagl_manual.rst
@@
-42,10
+42,10
@@
Status
..
Major New Features
..
Major New Features
- ------------------
+
..
------------------
Change Log
Change Log
- ----------
+
..
----------
.. INSERT CHANGE LOG HERE
.. END INSERT CHANGE LOG
.. INSERT CHANGE LOG HERE
.. END INSERT CHANGE LOG
@@
-268,13
+268,15
@@
open.
If you would like to see an example, you can load the
**mck3test.mupa** file in the examples directory that comes with
If you would like to see an example, you can load the
**mck3test.mupa** file in the examples directory that comes with
-Mussagl.
+Mussagl or read the `Step 5 - Create Analysis` section from the
+`Obtaining Input Data - Continued`_ section.
.. image:: images/load_mupa_dialog.png
:alt: Load Mussa Parameters Dialog
:align: center
.. image:: images/load_mupa_dialog.png
:alt: Load Mussa Parameters Dialog
:align: center
+
Load an analysis
~~~~~~~~~~~~~~~~
Load an analysis
~~~~~~~~~~~~~~~~
@@
-377,6
+379,9
@@
between the sequences (i.e. not reverse complement matches)
The amount of sequence conservation shown will depend on how much your
sequences are related and the `dynamic threshold`_ you are using.
The amount of sequence conservation shown will depend on how much your
sequences are related and the `dynamic threshold`_ you are using.
+To **deselect**, click and drag over any white area and then release
+the mouse button.
+
Blue conservation tracks
~~~~~~~~~~~~~~~~~~~~~~~~
Blue conservation tracks
~~~~~~~~~~~~~~~~~~~~~~~~
@@
-394,6
+399,8
@@
to the sequence attached to the top of the blue line.
The amount of sequence conservation shown will depend on how much your
sequences are related and the `dynamic threshold`_ you are using.
The amount of sequence conservation shown will depend on how much your
sequences are related and the `dynamic threshold`_ you are using.
+To **deselect**, click and drag over any white area and then release
+the mouse button.
Zoom Factor
~~~~~~~~~~~
Zoom Factor
~~~~~~~~~~~