-FIND_PACKAGE(Boost)
+set(Boost_USE_STATIC_LIBS ON)
+set(Boost_USE_MULTITHREADED ON)
+FIND_PACKAGE(Boost 1.34.1 COMPONENTS python filesystem serialization)
FIND_PACKAGE(OpenGL)
FIND_PACKAGE(PythonLibs)
FIND_PACKAGE(PythonInterp)
-SET(QT_DONT_USE_QTGUI 1)
+# SET(QT_DONT_USE_QTGUI 1)
FIND_PACKAGE(Qt4)
INCLUDE( ${QT_USE_FILE} )
-IF(BOOST_PYTHON_LIBRARY)
+IF(Boost_PYTHON_LIBRARY)
INCLUDE_DIRECTORIES(${PYTHON_INCLUDE_PATH} ${QT_INCLUDES})
SET(SOURCES
+ stl_container_adapter.cpp
+ alphabet.cpp
annot.cpp
annotation_colors.cpp
+ annotations.cpp
conserved_path.cpp
+ drawable.cpp
flp.cpp
glsequence.cpp
module.cpp
mussa.cpp
- # MussaWindow.cpp
nway_paths.cpp
+ seq_span.cpp
sequence.cpp
)
SET(QUI_SOURCES
module_qui.cpp
- MussaWindow.cpp
+ qt.cpp
+ sequence.cpp
+ glsequence.cpp
+ annotation_colors.cpp
+ sequencebrowserwidget.cpp
)
SET(MUSSA_LIBRARIES
mussa_core
- ${BOOST_PYTHON_LIBRARY}
- ${BOOST_FILESYSTEM_LIBRARY}
- ${BOOST_SERIALIZATION_LIBRARY}
+ ${Boost_PYTHON_LIBRARY}
+ ${Boost_SYSTEM_LIBRARY}
+ ${Boost_FILESYSTEM_LIBRARY}
+ ${Boost_SERIALIZATION_LIBRARY}
${OPENGL_gl_LIBRARY}
- optimized ${QT_QTCORE_LIBRARY}
- debug ${QT_QTCORE_LIBRARY_DEBUG}
+ ${QT_QTCORE_LIBRARY}
+ #optimized ${QT_QTCORE_LIBRARY_RELEASE}
+ #debug ${QT_QTCORE_LIBRARY_DEBUG}
)
GET_MUSSA_COMPILE_FLAGS(PY_CFLAGS)
GET_MUSSA_LINK_FLAGS(PY_LDFLAGS)
${PYTHON_LIBRARIES}
)
# configure static gui python library
- ADD_LIBRARY(mussaqui_py STATIC ${QUI_SOURCES})
- SET_TARGET_PROPERTIES(mussa_py PROPERTIES
- COMPILE_FLAGS "${PY_CFLAGS}"
- LINK_FLAGS "${PY_LDFLAGS}")
+ #ADD_LIBRARY(mussaqui_py STATIC ${QUI_SOURCES})
+ # SET_TARGET_PROPERTIES(mussa_py PROPERTIES
+ # COMPILE_FLAGS "${PY_CFLAGS}"
+ # LINK_FLAGS "${PY_LDFLAGS}")
# configure gui (shared) python library
- #ADD_LIBRARY(mussaqui MODULE ${QUI_SOURCES})
- #SET_TARGET_PROPERTIES(mussaqui PROPERTIES
- # PREFIX ""
- # COMPILE_FLAGS "${PY_CFLAGS}"
- # LINK_FLAGS "${PY_LDFLAGS}")
- #TARGET_LINK_LIBRARIES(mussaqui
- # mussa_qui
- # ${MUSSA_LIBRARIES}
- # ${PYTHON_LIBRARIES}
- # optimized ${QT_QTGUI_LIBRARY}
- # debug ${QT_QTGUI_LIBRARY_DEBUG}
- # optimized ${QT_QTOPENGL_LIBRARY}
- # debug ${QT_QTOPENGL_LIBRARY_DEBUG}
- # )
+ ADD_LIBRARY(mussaqui MODULE ${QUI_SOURCES})
+ SET_TARGET_PROPERTIES(mussaqui PROPERTIES
+ PREFIX ""
+ COMPILE_FLAGS "${PY_CFLAGS}"
+ LINK_FLAGS "${PY_LDFLAGS}")
+ TARGET_LINK_LIBRARIES(mussaqui
+ mussa_qui
+ ${MUSSA_LIBRARIES}
+ ${PYTHON_LIBRARIES}
+ ${QT_QTGUI_LIBRARY}
+ ${QT_QTOPENGL_LIBRARY}
+ )
SET_SOURCE_FILES_PROPERTIES(
${SOURCES}
IF(PYTHON_EXECUTABLE)
SET(PYTEST_DIR ${CMAKE_SOURCE_DIR}/py/test/)
+ ADD_TEST(TestAnnotations
+ ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestAnnotations.py)
+ ADD_TEST(TestSeqSpan ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestSeqSpan.py)
ADD_TEST(TestSequence ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestSequence.py)
ADD_TEST(TestFlp ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestFlp.py)
ADD_TEST(TestMussa ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestMussa.py)
ENDIF(PYTHON_EXECUTABLE)
-ELSE(BOOST_PYTHON_LIBRARY)
-ENDIF(BOOST_PYTHON_LIBRARY)
+ELSE(Boost_PYTHON_LIBRARY)
+ MESSAGE(STATUS "Not building mussa python extension, Boost python not found")
+ENDIF(Boost_PYTHON_LIBRARY)
ADD_SUBDIRECTORY(test)