.def("__delitem__", &std_item<Mussa::vector_sequence_type>::del)
;
- py::class_<Mussa>("Mussa")
+ py::class_<Mussa>("_Mussa", py::no_init)
.def("save", &Mussa::save)
.def("load", &Mussa::load, "Load previous run analysis")
.def("load_mupa", load_mupa_string, "Load mussa parameter file")
.def("clear", &Mussa::clear, "Clear the current analysis")
- .add_property("name", &Mussa::get_name, &Mussa::set_name)
- .def("size", &Mussa::size, "Number of sequences to be used "
- "in this analysis")
+ .add_property("name", &Mussa::get_name, &Mussa::set_name, "Set the name of the analysis")
+ .def("size", &Mussa::size, "Number of sequences attached to "
+ "this analysis")
.add_property("window", &Mussa::get_window, &Mussa::set_window,
"the number of base pairs in the sliding window")
.add_property("threshold", &Mussa::get_threshold, &Mussa::set_threshold,
&Mussa::set_analysis_mode)
.add_property("analysisModeName", &Mussa::get_analysis_mode_name)
.def("analyze", &Mussa::analyze, "Run the analysis")
- .def("paths", &Mussa::paths, py::return_internal_reference<>())
- .def("sequences", &Mussa::sequences, py::return_internal_reference<>())
- .def("add_sequence", append_sequence_ref)
+ .def("paths", &Mussa::paths, py::return_internal_reference<>(), "return list of paths")
+ .def("sequences", &Mussa::sequences, py::return_internal_reference<>(), "return list of sequences")
+ .def("add_sequence", append_sequence_ref, "attach a sequence to the analysis")
;
-
+ py::def("Mussa", &Mussa::init, "Construct a new Mussa object");
+ py::register_ptr_to_python< boost::shared_ptr<Mussa> >();
+
py::enum_<Mussa::analysis_modes>("analysis_modes")
.value("TransitiveNway", Mussa::TransitiveNway )
.value("RadialNway", Mussa::RadialNway )