Store Sequence sequence location in a shared_ptr class

[mussa.git] / qui / MussaAlignedWindow.cpp

diff --git a/qui/MussaAlignedWindow.cpp b/qui/MussaAlignedWindow.cpp
index 9d6ff3f640248efd3a1a6617a473bb825576a395..085a8b67e2bc4788602a2b231ad0e03bab0d4dd9 100644 (file)
--- a/qui/MussaAlignedWindow.cpp
+++ b/qui/MussaAlignedWindow.cpp
@@ -12,13 +12,16 @@
 #include <iostream>
 using namespace std;
 
-MussaAlignedWindow::MussaAlignedWindow(MussaRef m, 
+MussaAlignedWindow::MussaAlignedWindow(MussaRef m,
+                                       boost::shared_ptr<QDir> default_dir_,
                                        const set<int>& sel_paths,
                                        SubanalysisWindowRef window, 
                                        QWidget *parent)
   : QMainWindow(parent),
     analysis(m),
+    default_dir(default_dir_),
     subanalysis_window(window),
+    browser(default_dir),
     pick_align_menu(tr("Choose Alignment")),
     view_align_menu(tr("View Alignment")),
     threshold_widget(0),
@@ -26,6 +29,8 @@ MussaAlignedWindow::MussaAlignedWindow(MussaRef m,
     alignTB(0)
 {
   setupActions();
+  connect(&browser, SIGNAL(basepairsCopied(size_t)), 
+          this, SLOT(showBasePairsCopied(size_t)));
   browser.setSequences(analysis->sequences(), analysis->colorMapper());
   setSelectedPaths(analysis, sel_paths);
   setAlignment(0);
@@ -80,6 +85,7 @@ void MussaAlignedWindow::setupMenus()
   newMenu->addAction(saveBrowserPixmapAction);
 
   newMenu = menuBar()->addMenu(tr("&Edit"));
+  newMenu->addAction(browser.getCopySelectedSequenceAsStringAction());
   newMenu->addAction(browser.getCopySelectedSequenceAsFastaAction());
   newMenu->addAction(createSubAnalysisAction);
   
@@ -187,6 +193,15 @@ void MussaAlignedWindow::setAlignment(int alignment_index)
   }
 }
 
+void MussaAlignedWindow::showBasePairsCopied(size_t bp_copied)
+{
+  QString msg("Copied ");
+  QString num;
+  num.setNum(bp_copied);
+  msg += num + " base pairs";
+  statusBar()->showMessage(msg, 5000);
+}
+
 void MussaAlignedWindow::toggleViewAlignment(int alignment_index)
 {
   view_paths[alignment_index]= not view_paths[alignment_index];