#include <iostream>
using namespace std;
-MussaAlignedWindow::MussaAlignedWindow(MussaRef m,
+MussaAlignedWindow::MussaAlignedWindow(MussaRef m,
+ boost::shared_ptr<QDir> default_dir_,
const set<int>& sel_paths,
SubanalysisWindowRef window,
QWidget *parent)
: QMainWindow(parent),
analysis(m),
+ default_dir(default_dir_),
subanalysis_window(window),
+ browser(default_dir),
pick_align_menu(tr("Choose Alignment")),
view_align_menu(tr("View Alignment")),
threshold_widget(0),