using namespace std;
+static void init_resources() {
+ static bool resources_loaded = false;
+ if (not resources_loaded) {
+ Q_INIT_RESOURCE(icons);
+ resources_loaded = true;
+ }
+}
+
MussaWindow::MussaWindow(MussaRef analysis_, QWidget *parent) :
QMainWindow(parent),
analysis(analysis_),
- default_dir(new QDir(QDir::home().absolutePath())),
motif_editor(0),
- setup_analysis_dialog(new MussaSetupDialog(this)),
- subanalysis_window(new SubanalysisWindow(analysis)),
- browser(new SequenceBrowserWidget(default_dir, this)),
- mussaViewTB(new QToolBar("Path Views")),
- zoom(new ZoomWidget),
- threshold(new ThresholdWidget),
+ setup_analysis_dialog(0),
+ browser(0),
+ mussaViewTB(0),
+ zoom(0),
+ threshold(0),
progress_dialog(0),
aboutAction(0),
closeAction(0),
viewMussaAlignmentAction(0),
manualAssistant(0)
{
+ init_resources();
+ setupWidgets();
setupActions();
- setupMainMenu();
setupAssistant();
+ setupMainMenu();
+
+ setWindowIcon(QIcon(":/icons/mussa.png"));
+ default_dir.reset(new QDir(QDir::home().absolutePath()));
- //This next setWhatsThis function prevents
- // a segfault when using WhatsThis feature with
- // opengl widget.
- //scene->setWhatsThis(tr("Mussa in OpenGL!"));
setCentralWidget(browser);
// well updatePosition isn't quite right as we really just need
// to call update()
connect(this, SIGNAL(changedMotifs()), this, SLOT(updateAnnotations()));
connect(browser, SIGNAL(basepairsCopied(size_t)),
this, SLOT(showBasePairsCopied(size_t)));
-
- //mussaViewTB->addAction(toggleMotifsAction);
- mussaViewTB->addWidget(zoom);
-
connect(zoom, SIGNAL(valueChanged(double)),
browser, SLOT(setZoom(double)));
-
- // threshold range is set in updateAnalysis
-
- //scene->setClipPlane(20);
- // FIXME: for when we get the paths drawn at the appropriate depth
- //connect(threshold, SIGNAL(thresholdChanged(int)),
- // this, SLOT(setClipPlane(int)));
+ mussaViewTB->addWidget(zoom);
+
+ // threshold range is set in updateAnalysis
connect(threshold, SIGNAL(thresholdChanged(int)),
this, SLOT(setSoftThreshold(int)));
mussaViewTB->addWidget(threshold);
addToolBar(mussaViewTB);
statusBar()->showMessage("Welcome to mussa", 2000);
+
// FIXME: we should start refactoring the connect call to updateAnalysis or something
if (analysis) {
connect(analysis.get(), SIGNAL(progress(const QString&, int, int)),
mussaManualAssistantAction = new QAction(tr("Mussagl Manual..."), this);
mussaManualAssistantAction->setIcon(QIcon(":/icons/contents.png"));
connect(mussaManualAssistantAction, SIGNAL(triggered()),
- this, SLOT(showManual()));
+ this, SLOT(showManual()));
newMussaWindowAction = new QAction(tr("&New Mussa Window"), this);
newMussaWindowAction->setStatusTip("open another mussa window to allow comparing results");
//Save pixel map action
saveBrowserPixmapAction = new QAction(tr("Save to image..."), this);
- connect(saveBrowserPixmapAction, (SIGNAL(triggered())),
- browser, SLOT(promptSaveBrowserPixmap()));
- saveBrowserPixmapAction->setIcon(QIcon(":/icons/image2.png"));
+ if (browser) {
+ connect(saveBrowserPixmapAction, (SIGNAL(triggered())),
+ browser, SLOT(promptSaveBrowserPixmap()));
+ saveBrowserPixmapAction->setIcon(QIcon(":/icons/image2.png"));
+ }
viewMussaAlignmentAction = new QAction(tr("View sequence alignment"), this);
connect(viewMussaAlignmentAction, SIGNAL(triggered()),
newMenu = menuBar()->addMenu(tr("&Edit"));
newMenu->addAction(editMotifsAction);
- newMenu->addAction(browser->getCopySelectedSequenceAsStringAction());
- newMenu->addAction(browser->getCopySelectedSequenceAsFastaAction());
+ if (browser) newMenu->addAction(browser->getCopySelectedSequenceAsStringAction());
+ if (browser) newMenu->addAction(browser->getCopySelectedSequenceAsFastaAction());
newMenu->addAction(createSubAnalysisAction);
- newMenu->addAction(browser->getEditSequencePropertiesAction());
+ if (browser) newMenu->addAction(browser->getEditSequencePropertiesAction());
newMenu = menuBar()->addMenu(tr("&View"));
newMenu->addAction(viewMussaAlignmentAction);
newMenu->addAction(aboutAction);
// add some extra features to the context menu
- QMenu *popupMenu = browser->getPopupMenu();
- if (popupMenu) {
- popupMenu->addAction(viewMussaAlignmentAction);
- popupMenu->addAction(createSubAnalysisAction);
+ if (browser) {
+ QMenu *popupMenu = browser->getPopupMenu();
+ if (popupMenu) {
+ popupMenu->addAction(viewMussaAlignmentAction);
+ popupMenu->addAction(createSubAnalysisAction);
+ }
}
}
+void MussaWindow::setupWidgets()
+{
+ setup_analysis_dialog = new MussaSetupDialog;
+ subanalysis_window.reset(new SubanalysisWindow(analysis));
+ browser = new SequenceBrowserWidget(default_dir);
+ mussaViewTB = new QToolBar("Path Views", this);
+ zoom = new ZoomWidget(mussaViewTB);
+ threshold = new ThresholdWidget(mussaViewTB);
+}
+
void MussaWindow::setupAssistant()
{
#if defined(QT_QTASSISTANT_FOUND)
msg += "Version: ";
msg += mussa_version;
msg += "\n";
+ msg += "Qt: ";
+ msg += qVersion();
+ msg += "\n";
msg += "OpenGL: ";
msg += (char *)glGetString(GL_VERSION);
msg += "\n";
void MussaWindow::clear()
{
+ if (motif_editor != 0) {
+ motif_editor->hide();
+ delete motif_editor;
+ }
+
aligned_windows.clear();
browser->clear();
}
void MussaWindow::editMotifs()
{
- if (motif_editor != 0) {
- motif_editor->hide();
- delete motif_editor;
+ if (not motif_editor) {
+ motif_editor = new MotifEditor(analysis);
+ connect(motif_editor, SIGNAL(changedMotifs()),
+ this, SLOT(updateAnnotations()));
}
- motif_editor = new MotifEditor(analysis);
- connect(motif_editor, SIGNAL(changedMotifs()),
- this, SLOT(updateAnnotations()));
motif_editor->show();
}