from setuptools import setup, Extension
+import distutils.command.build_ext
+from distutils.dep_util import newer
import os
-mussa_ext = Extension("mussa", ["py/conserved_path.cpp",
- "py/glsequence.cpp",
- "py/module.cpp",
- "py/mussa.cpp",
- #"py/MussaWindow.cpp",
- "py/nway_paths.cpp",
- "py/sequence.cpp",
- "alg/annotation_colors.cpp",
- "alg/color.cpp",
- "alg/conserved_path.cpp",
- "alg/flp.cpp",
- "alg/flp_seqcomp.cpp",
- "alg/glseqbrowser.cpp",
- "alg/glsequence.cpp",
- "alg/mussa.cpp",
- "alg/nway_entropy.cpp",
- "alg/nway_other.cpp",
- "alg/nway_paths.cpp",
- #"alg/nway_refine",
- #"alg/parse_options.cpp",
- "alg/sequence.cpp"],
- include_dirs=['/usr/include/boost',
- '.'
- #os.getcwd()
- ],
- libraries=['boost_python',
- 'boost_filesystem',
- 'GL',
- ])
-
-setup(name='mussa',
+import sys
+
+def replace_suffix(path, new_suffix):
+ return os.path.splitext(path)[0]+new_suffix
+
+class build_ext(distutils.command.build_ext.build_ext):
+ description="also compile qt moc files"
+
+ def __init__(self, *args, **kwargs):
+ if sys.platform == 'linux2':
+ self.moc_binary = 'moc'
+ self.rcc_binary = 'rcc'
+
+ if os.path.exists('/usr/bin/moc-qt4'):
+ self.moc_binary = '/usr/bin/moc-qt4'
+ if os.path.exists('/usr/bin/rcc-qt4'):
+ self.rcc_binary = '/usr/bin/rcc-qt4'
+
+ distutils.command.build_ext.build_ext.__init__(self, *args, **kwargs)
+
+ def swig_sources(self, sources, extensions=None):
+ if self.extensions is None:
+ return
+
+ # filter out sources
+ qrc_sources = []
+ moc_sources = []
+ other_sources = []
+ for src in sources:
+ base,ext= os.path.splitext(src)
+ if ext == '.qrc':
+ qrc_sources.append(src)
+ elif ext in ('.hpp', '.hxx', '.h'):
+ moc_sources.append(src)
+ else:
+ other_sources.append(src)
+
+ build_sources = other_sources
+ # create qresource
+ build_sources.extend(self.compile_qrcs(qrc_sources))
+ # create moc files
+ build_sources.extend(self.compile_mocs(moc_sources))
+ return build_sources
+
+ def compile_qrcs(self, qrc_files):
+ targets = []
+ for qrc in qrc_files:
+ if os.path.exists(qrc):
+ source = qrc
+ name = os.path.splitext(os.path.split(qrc)[1])[0]
+ target = "qrc_"+name+".cpp"
+ if newer(source, target) or self.force:
+ self.compile_qrc(name, source, target)
+ targets.append(target)
+ return targets
+
+ def compile_qrc(self, name, source, target):
+ """compile qt resource file"""
+ os.system("%s -name %s -o %s %s" %(self.rcc_binary, name, target, source))
+
+ def compile_mocs(self, moc_headers):
+ targets = []
+
+ for moc_hpp in moc_headers:
+ if os.path.exists(moc_hpp):
+ source = moc_hpp
+ target = "moc_"+replace_suffix(os.path.split(moc_hpp)[1],'.cpp')
+ if newer(source, target) or self.force:
+ self.compile_moc(source, target)
+ targets.append(target)
+ return targets
+
+ def compile_moc(self, source, target):
+ os.system("%s -o%s %s" %(self.moc_binary, target, source))
+
+boost_py = ["py/conserved_path.cpp",
+ "py/glsequence.cpp",
+ "py/module.cpp",
+ "py/mussa.cpp",
+ "py/MussaWindow.cpp",
+ "py/nway_paths.cpp",
+ "py/sequence.cpp",]
+
+core_alg = ["alg/annotation_colors.cpp",
+ "alg/color.cpp",
+ "alg/conserved_path.cpp",
+ "alg/flp.cpp",
+ "alg/flp_seqcomp.cpp",
+ "alg/glseqbrowser.cpp",
+ "alg/glsequence.cpp",
+ "alg/mussa.cpp",
+ "alg/nway_entropy.cpp",
+ "alg/nway_other.cpp",
+ "alg/nway_paths.cpp",
+ #"alg/nway_refine",
+ #"alg/parse_options.cpp",
+ "alg/sequence.cpp",]
+
+moc_headers = ['qui/ImageSaveDialog.hpp',
+ 'qui/ImageScaler.hpp',
+ 'qui/IntAction.hpp',
+ 'qui/MussaAlignedWindow.hpp',
+ 'qui/MussaWindow.hpp',
+ 'qui/ThresholdWidget.hpp',
+ 'qui/ZoomWidget.hpp',
+ 'qui/motif_editor/MotifDetail.hpp',
+ 'qui/motif_editor/MotifEditor.hpp',
+ 'qui/mussa_setup_dialog/IsFileValidator.hpp',
+ 'qui/mussa_setup_dialog/MussaSetupDialog.hpp',
+ 'qui/mussa_setup_dialog/MussaSetupWidget.hpp',
+ 'qui/mussa_setup_dialog/SequenceSetupFrame.hpp',
+ 'qui/mussa_setup_dialog/SequenceSetupWidget.hpp',
+ 'qui/mussa_setup_dialog/SetupInfo.hpp',
+ 'qui/seqbrowser/ScrollableSequenceBrowser.hpp',
+ 'qui/seqbrowser/SequenceBrowser.hpp',
+ 'qui/seqbrowser/SequenceBrowserSidebar.hpp',
+ 'qui/seqbrowser/SequenceBrowserWidget.hpp',
+ 'qui/seqbrowser/SequenceDescription.hpp',]
+
+qui_sources = ['qui/ImageSaveDialog.cpp',
+ 'qui/ImageScaler.cpp',
+ 'qui/IntAction.cpp',
+ 'qui/MussaAlignedWindow.cpp',
+ 'qui/MussaWindow.cpp',
+ 'qui/ThresholdWidget.cpp',
+ 'qui/ZoomWidget.cpp',
+ 'qui/motif_editor/MotifDetail.cpp',
+ 'qui/motif_editor/MotifEditor.cpp',
+ 'qui/mussa_setup_dialog/IsFileValidator.cpp',
+ 'qui/mussa_setup_dialog/MussaSetupDialog.cpp',
+ 'qui/mussa_setup_dialog/MussaSetupWidget.cpp',
+ 'qui/mussa_setup_dialog/SequenceSetupFrame.cpp',
+ 'qui/mussa_setup_dialog/SequenceSetupWidget.cpp',
+ 'qui/mussa_setup_dialog/SetupInfo.cpp',
+ 'qui/seqbrowser/ScrollableSequenceBrowser.cpp',
+ 'qui/seqbrowser/SequenceBrowser.cpp',
+ 'qui/seqbrowser/SequenceBrowserSidebar.cpp',
+ 'qui/seqbrowser/SequenceBrowserWidget.cpp',
+ 'qui/seqbrowser/SequenceDescription.cpp',
+ ]
+
+qrc_sources = ['icons.qrc']
+
+sources = boost_py+core_alg+moc_headers+qui_sources+qrc_sources
+
+
+extra_link_args = []
+libraries = ['boost_python',
+ 'boost_filesystem']
+include_dirs = ['.']
+
+if sys.platform == 'darwin':
+ import py2app
+ qtroot = '/usr/local/qt/4.1.2'
+ qtincludes.os.path.join(qtroot, 'include')
+ extra_link_args.extend([
+ '-F%s/lib' % (qtroot),
+ '-framework', 'QtCore',
+ '-framework', 'QtGui',
+ '-framework', 'QtOpenGL',
+ '-framework', 'OpenGL',
+ ])
+else:
+ qtroot = '/usr'
+ qtinclude = os.path.join(qtroot, 'include', 'qt4')
+ libraries += ['QtCore']
+ libraries += ['QtGui']
+ libraries += ['QtOpenGL']
+
+
+
+for qtdir in ['','QtCore','QtGui','QtOpenGL']:
+ include_dirs.append(os.path.join(qtinclude, qtdir))
+
+mussa_ext = Extension("_mussa",
+ sources,
+ include_dirs=include_dirs,
+ library_dirs=[
+ #'/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/lib/',
+ '/usr/local/qt/4.1.2/lib',
+ ],
+ libraries=libraries,
+ extra_link_args = extra_link_args
+ )
+setup(app=['mussa.py'],
+ name='mussa',
version='0.0',
- ext_modules=[mussa_ext])
+ ext_modules=[mussa_ext],
+ cmdclass={'build_ext': build_ext})
+
projects / mussa.git / blobdiff