go back to using const char * in seqcomp
authorDiane Trout <diane@caltech.edu>
Thu, 7 Sep 2006 00:32:32 +0000 (00:32 +0000)
committerDiane Trout <diane@caltech.edu>
Thu, 7 Sep 2006 00:32:32 +0000 (00:32 +0000)
commita1b5ecc1ff79d588ffd1b68bc443e695825291c5
treec0def993c5b4d6b9443165c34c6295540251779d
parentbae8b6e700c4fc2a7bcd2483a8b3e1dd489b394b
go back to using const char * in seqcomp
it appears that the string iterator version is about half as fast
as just using raw const char * pointers.

Hopefully the string pointers won't get moved around behind the scenes
while seqcomp is running. (Currently shouldn't as once a sequence is
set it's supposed to be constant.
alg/flp_seqcomp.cpp
alg/sequence.cpp
alg/sequence.hpp