go back to using const char * in seqcomp

[mussa.git] / alg / flp_seqcomp.cpp

diff --git a/alg/flp_seqcomp.cpp b/alg/flp_seqcomp.cpp
index 2c7ad7a4adb9cb2145461149f74f32e55cf49d25..04eca42dd0711266d3876a505c6e1e6bccedb348 100644 (file)
--- a/alg/flp_seqcomp.cpp
+++ b/alg/flp_seqcomp.cpp
@@ -52,8 +52,8 @@ FLPs::seqcomp(const Sequence& sseq1, const Sequence& sseq2, bool is_RC)
   int start_i, seq1_i, seq2_i, win_i;      // loop variables
   int matches;                    // number of matches in to a window
   int i2_offset;
-  Sequence::const_iterator seq1 = sseq1.begin();
-  Sequence::const_iterator seq2 = sseq2.begin();
+  const char *seq1 = sseq1.c_str();
+  const char *seq2 = sseq2.c_str();
 
   int seq1_win_num = sseq1.size() - window_size + 1;
   int seq2_win_num = sseq2.size() - window_size + 1;