remove mck3test.museq and .muway
authorDiane Trout <diane@caltech.edu>
Wed, 9 Aug 2006 00:26:44 +0000 (00:26 +0000)
committerDiane Trout <diane@caltech.edu>
Wed, 9 Aug 2006 00:26:44 +0000 (00:26 +0000)
those shouldn't exist as they should be generated by running
the app?

examples/mck3test_example.museq [deleted file]
examples/mck3test_example.muway [deleted file]

diff --git a/examples/mck3test_example.museq b/examples/mck3test_example.museq
deleted file mode 100644 (file)
index 6184d20..0000000
+++ /dev/null
@@ -1,20 +0,0 @@
-<Mussa_Sequence>
-<Sequence>
-CCATCCTGGTCTATAGAGAGAGTTCCAGAACAGCCAGGGCTACAGATAAACCCATCTGGAAAAACAAAGTTGAATGACCCAAGAGGGGTTCTCAGAGGGTGGCGTGTGCTCCCTGGCAAGCCTATGACATGGCCGGGGCCTGCCTCTCTCTGCCTCTGACCCTCAGTGGCTCCCATGAACTCCTTGCCCAATGGCATCTTTTTCCTGCGCTCCTTGGGTTATTCCAGTCTCCCCTCAGCATTCCTTCCTCAGGGCCTCGCTCTTCTCTCTGCTCCCTCCTTGCACAGCTGGCTCTGTCCACCTCAGATGTCACAGTGCTCTCTCAGAGGAGGAAGGCACCATGTACCCTCTGTTTCCCAGGTAAGGGTTCAATTTTTAAAAATGGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCAAGACAGGGCTCCTCTGTGTAGTCCTAACTGTCTTGAAACTCCCTCTGTAGACCAGGTCGACCTCGAACTCTTGAAACCTGCCACGGACCACCCAGTCAGGTATGGAGGTCCCTGGAATGAGCGTCCTCGAAGCTAGGTGGGTAAGGGTTCGGCGGTGACAAACAGAAACAAACACAGAGGCAGTTTGAATCTGAGTGTATTTTGCAGCTCTCAAGCAGGGGATTTTATACATAAAAAAAAAAAAAAAAAAAAAACCAAACATTACATCTCTTAGAAACTATATCCAATGAAACAATCACAGATACCAACCAAAACCATTGGGCAGAGTAAAGCACAAAAATCATCCAAGCATTACAACTCTGAAACCATGTATTCAGTGAATCACAAACAGAACAGGTAACATCATTATTAATATAAATCACCAAAATATAACAATTCTAAAAGGATGTATCCAGTGGGGGCTGTCGTCCAAGGCTAGTGGCAGATTTCCAGGAGCAGGTTAGTAAATCTTAACCACTGAACTAACTCTCCAGCCCCATGGTCAATTATTATTTAGCATCTAGTGCCTAATTTTTTTTTATAAATCTTCACTATGTAATTTAAAACTATTTTAATTCTTCCTAATTAAGGCTTTCTTTACCATATACCAAAATTCACCTCCAATGACACACGCGTAGCCATATGAAATTTTATTGTTGGGAAAATTTGTACCTATCATAATAGTTTTGTAAATGATTTAAAAAGCAAAGTGTTAGCCGGGCGTGGTGGCACACGCCTTTAATCCCTGCACTCGGGAGGCAGGGGCAGGAGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAACCCCCCACCCCCCAAAAAAAGCAAAGTGTTGGTTTCCTTGGGGATAAAGTCATGTTAGTGGCCCATCTCTAGGCCCATCTCACCCATTATTCTCGCTTAAGATCTTGGCCTAGGCTACCAGGAACATGTAAATAAGAAAAGGAATAAGAGAAAACAAAACAGAGAGATTGCCATGAGAACTACGGCTCAATATTTTTTCTCTCCGGCGAAGAGTTCCACAACCATCTCCAGGAGGCCTCCACGTTTTGAGGTCAATGGCCTCAGTCTGTGGAACTTGTCACACAGATCTTACTGGAGGTGGTGTGGCAGAAACCCATTCCTTTTAGTGTCTTGGGCTAAAAGTAAAAGGCCCAGAGGAGGCCTTTGCTCATCTGACCATGCTGACAAGGAACACGGGTGCCAGGACAGAGGCTGGACCCCAGGAACACCTTAAACACTTCTTCCCTTCTCCGCCCCCTAGAGCAGGCTCCCCTCACCAGCCTGGGCAGAAATGGGGGAAGATGGAGTGAAGCCATACTGGCTACTCCAGAATCAACAGAGGGAGCCGGGGGCAATACTGGAGAAGCTGGTCTCCCCCCAGGGGCAATCCTGGCACCTCCCAGGCAGAAGAGGAAACTTCCACAGTGCATCTCACTTCCATGAATCCCCTCCTCGGACTCTGAGGTCCTTGGTCACAGCTGAGGTGCAAAAGGCTCCTGTCATATTGTGTCCTGCTCTGGTCTGCCTTCCACAGCTTGGGGGCCACCTAGCCCACCTCTCCCTAGGGATGAGAGCAGCCACTACGGGTCTAGGCTGCCCATGTAAGGAGGCAAGGCCTGGGGACACCCGAGATGCCTGGTTATAATTAACCCAGACATGTGGCTGCCCCCCCCCCCCCAACACCTGCTGCCTGAGCCTCACCCCCACCCCGGTGCCTGGGTCTTAGGCTCTGTACACCATGGAGGAGAAGCTCGCTCTAAAAATAACCCTGTCCCTGGTGGATCCAGGGTGAGGGGCAGGCTGAGGGCGGCCACTTCCCTCAGCCGCAGGTTTGTTTTCCCAAGAATGGTTTTTCTGCTTCTGTAGCTTTTCCTGTCAATTCTGCCATGGTGGAGCAGCCTGCACTGGGCTTCTGGGAGAAACCAAACCGGGTTCTAACCTTTCAGCTACAGTTATTGCCTTTCCTGTAGATGGGCGACTACAGCCCCACCCCCACCCCCGTCTCCTGTATCCTTCCTGGGCCTGGGGATCCTAGGCTTTCACTGGAAATTTCCCCCCAGGTGCTGTAGGCTAGAGTCACGGCTCCCAAGAACAGTGCTTGCCTGGCATGCATGGTTCTGAACCTCCAACTGCAAAAAATGACACATACCTTGACCCTTGGAAGGCTGAGGCAGGGGGATTGCCATGAGTGCAAAGCCAGACTGGGTGGCATAGTTAGACCCTGTCTCAAAAAACCAAAAACAATTAAATAACTAAAGTCAGGCAAGTAATCCTACTCGGGAGACTGAGGCAGAGGGATTGTTACATGTCTGAGGCCAGCCTGGACTACATAGGGTTTCAGGCTAGCCCTGTCTACAGAGTAAGGCCCTATTTCAAAAACACAAACAAAATGGTTCTCCCAGCTGCTAATGCTCACCAGGCAATGAAGCCTGGTGAGCATTAGCAATGAAGGCAATGAAGGAGGGTGCTGGCTACAATCAAGGCTGTGGGGGACTGAGGGCAGGCTGTAACAGGCTTGGGGGCCAGGGCTTATACGTGCCTGGGACTCCCAAAGTATTACTGTTCCATGTTCCCGGCGAAGGGCCAGCTGTCCCCCGCCAGCTAGACTCAGCACTTAGTTTAGGAACCAGTGAGCAAGTCAGCCCTTGGGGCAGCCCATACAAGGCCATGGGGCTGGGCAAGCTGCACGCCTGGGTCCGGGGTGGGCACGGTGCCCGGGCAACGAGCTGAAAGCTCATCTGCTCTCAGGGGCCCCTCCCTGGGGACAGCCCCTCCTGGCTAGTCACACCCTGTAGGCTCCTCTATATAACCCAGGGGCACAGGGGCTGCCCCCGGGTCAC
-</Sequence>
-<Annotations>
-300 600 Glorp Glorptype
-</Annotations>
-<Sequence>
-GGATCCTTCCTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCTGGCCTATTACCCTTCTCAGGCTCTGGAGTCCATCCTTCTGCTCTGTCTCCCTCAGTTCAATTGTTTTTTGTTTTTTGTTTTTTTTTTAGACACAGTCTCGCTCTGTCACCAAGGCTGGAGTGCAGCAGTGCGATCACAGCTCACCGCAGCCTCACCTCCCAGGCTCAAGTGATCCTCCCATCTCGGCCTCTGAGTAGCTGAGACTATAGGTGTGTCCACATGTCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGCGTTGGCCAGGGTGGTCTTGAACTCCTGAGCTCAAGCAATCCTCCTGCCTCAGCCTCCTTGTTTTGATTTTTAGATCCCACAAATAACTTGTGATGTTTGTCTTTCTATACCTGGTTCATTTAACATTTTCTTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTGTGAGACTGAGTCTTGCTCTGTCACTCAGGCTGGAGGGCAATGGTGCATCTCAGCTCACTGCAACCTCCACCTCCTAGGTTCAAGCAATTCTTATGCCTCAGCCTCCTGGCTAGCTGGGATTACAGGCGTGTGTCACCATGCCAGGCTAATTTTTGTACTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCACCCGCCTCCGCCTCTGCCTCCCAAAGTGCTGGGATTACGGGCCTGAGCCACTGTGCCCGGCCCATCTAACATTTTCACTGTCAATCACAATGGGATTAAAACTCCTCCCACAGCCCCTAGGGACCATGGGTCTGCTCCTGTCTCCCCTCCAACCTCATCTTCTTCCTCCCACTCTCTCCTTGGCCCCATCTGCTCCAGTCCCCTGGCCTCCTTCCTGTCTGTCCTCAGATGTGCCCAGCCATTCTCACCTCAGCGCCTTTGCACCTGCTGTTCCCCCCAGAGCCGCACATGGCTGGCTCCCTGTTCTCCTTCAGGTCTCTGCTCAGATGTCATCTTCCCAAAGAGGCCTGCCTCGACCTCCCCTGCTGCTGTGCCGTCCCCTCATCTGTGACCCTCTTGCACTATCACCTCCAGGACGGCGGGGGTTTTGTGTTTTGTTGTAGCCTCAGGAAGTGCCTGATAGATCCCTGTTTCGAGACCAGTTCCATTTGGTTTTCTGGGCCTCAGTTTCCGTAACCGTGAAGGAGACCCTCGGCAATCTGAGCTTGCTGGGAAAGGGCTGGGCCCCATGTAAATATTTCTAAAGCACCCCTCTCCCCTCCCCCCTCAGATCAGGAGTCTGAGGGAGAGGCACAGAGGCTCCCTTTCTCTAAGCCAGTCCTCACCTGCCTAAGAAGATGTGAAGGAGACCCAGGAGACCCTGGGATAGGGAGGAACTCAGAGGGAAGGGACATTCTTTTCTTCGTCGCAATCCTGGGAGCTCCCTGGAGGAGGAGACCCGATCAGCCTGCAATCCTGGCGCGTCCCAGGAGGAGAAAGCGGCTTCCTCTATACTGTACTCTCCTCCACAGAACCCCCCTCTCAGCCCTGGAAGTCCTTGCTCACAGCCGAGGCGCCGAGAGCGCTTGCTCTGCCCAGATCTCGGCGAGTCTGCGCCCGCGCTCTGAACGGCGTCGCTGCCCAGCCCCCTTCCCCGGGAGGTGGGAGCGGCCACCCAGGGCCCCGTGGCTGCCCTTGTAAGGAGGCGAGGCCGAGGACACCCGAGACGCCCGGTTATAATTAACCAGGACACGTGGCGAACCCCCCTCCAACACCTGCCCCCGAACCCCCCCATACCCAGCGCCTCGGGTCTCGGCCTTTGCGGCAGAGGAGACAGCAAAGCGCCCTCTAAAAATAACTCCTTTCCCGGCGACCGAGACCCTCCCTGTCCCCGCACAGCGAAATCTCCCAGTGGCACCGAGGGGGCGAGGGTTAAGTGGGGGGGAGGGTGACCACCGCCTCCCACCCTTGCCCTGAGTTTGAATCTCTCCAACTCAGCCAGCCTCAGTTTCCCCTCCACTCAGTCCCTAGGAGGAAGGGGCGCCCAAGCGGGTTTCTGGGGTTAGACTGCCCTCCATTGCAATTGGTCCTTCTCCCGGCCTCTGCTTCCTCCAGCTCACAGGGTATCTGCTCCTCCTGGAGCCACACCTTGGTTCCCCGAGGTGCCGCTGGGACTCGGGTAGGGGTGAGGGCCCAGGGGCGACAGGGGGAGCCGAGGGCCACAGGAAGGGCTGGTGGCTGAAGGAGACTCAGGGGCCAGGGGACGGTGGCTTCTACGTGCTTGGGACGTTCCCAGCCACCGTCCCATGTTCCCGGCGGGGGCCAGCTGTCCCCACCGCCAGCCCAACTCAGCACTTGGTTAGGGTATCAGCTTGGTGGGGGCGTGAGCCCAGCCCTGGGGCGCTCAGCCCATACAAGGCCATGGGGCTGGGCGCAAAGCATGCCTGGGTTCAGGGTGGGTATGGTGCCGGAGCAGGGAGGTGAGAGGCTCAGCTGCCCTCCAGAACTCCTCCCTGGGGACAACCCCTCCCAGCCAATAGCACAGCCTAGGTCCCCCTATATAAGGCCACGGCTGCTGGCCCTTCCTTTGGGTCAGTGTCACCTCCAGGATACAGACAGCCCCCCTTCAGCCCAGCCCAGCCAGGTACTGCACGGGGCGGGAATCTGGGTGGGGGCCAGAGTAGGGGATTTCTGTGGGTGCTAGAGGCTTGGCTTGGGAAAGGGTCTGTGTGTCACCCCTTGCTCCACCAACATCCTCCTATACAAAGGCAGGTCGGTGCGTGGGAAGGTTGACCCTTGTGTGTCTGGGAGGCCCCTCCATCTGTGAGGCTGCCTGAACCCCCACTGGGACCTGTGATTTCTGCGGCACAG
-</Sequence>
-<Annotations>
-300 600 Glorp Glorptype
-</Annotations>
-<Sequence>
-CTCCCTGAGGGGAGTGCCCCGCTTAGCCCTCAGCCCTGGCACCCACCAGGCAGAGGAGGCAGCTCCCAGAGTCCCCGGCTGAGGGGGCCTGCCCATGTCCTCGCGAGTCGGGCACCCAGTCCCCTTCCCTGGGGGCCTCGGGTGCCTTGTAAGGAGGCAAGGCCCAGGACACCCGAGCTGCCGGCTATAATTAGCCTGGACACGTGGGCCCCCCGCCAGCACCTGCCCTGAGCCCCCCTACCCGCAGCCTTGGGTGCTGGGACTGCCGACAGCAGAGACCGCTCTAAAAATAGCTCCCTTCCTGGACGGCCCCTCCCAGCAGGCCCCCCACCCCCCGCTGAGGCTCACTGCTGGTGTCCCTGCCTGGTGCTCCCTAGGGTGTGCACCCACGGCAGGTGCAGAGGCAGGGGGCACCGCGGGGGGCTGGTAACAGCAGCAGGCCTAGGGGCCAGGGGACGGCGAGCTGTACGTGCCAGGACACCCCCAGCCACTGTCCCGTGCTCCCGGCGGGGGCCAGCTGTCCCCCGCCAGCCCGACTCAGCACTTGCTCTGCACATCGGCCTGGGGCGGCCCATACAAGGGCATGGGGCTGGGCACAAGGCACGCCCGCGTCCAGGTGGGCACTGTGCCCGGGCATGGTGGGGGGAGAGGCTGGGCTGCCTTCCAGGCCCCCTCCCTGGGGCCAGCCCCGCCCAGCCAGTGGCACAGCAGGGTCCCCTACATAAAGCCGGGGCCGCGGGCCCTGGATCTGCCTCAGTGTCGCCTGCAGGACACACGTAGCCCCGCTCAGCACAGCCCAGCCAG
-</Sequence>
-<Annotations>
-300 600 Glorp Glorptype
-</Annotations>
-</Mussa_Sequence>
diff --git a/examples/mck3test_example.muway b/examples/mck3test_example.muway
deleted file mode 100644 (file)
index ed3f1d6..0000000
+++ /dev/null
@@ -1,41 +0,0 @@
-<Mussa type=flp seq_num=3 win=30 thres=20 >
-31:1895,1497,24
-30:1899,1459,28
-30:1901,1503,30
-30:1901,1461,30
-34:1904,1506,33
-47:2100,1711,130
-30:2123,1733,152
-34:2125,1735,154
-30:2131,1741,160
-30:2133,1743,162
-44:2148,1758,176
-30:2186,1793,208
-40:2261,1868,271
-31:3015,2264,424
-34:3071,2326,485
-31:3085,2339,498
-30:3086,-2346,499
-30:3087,2341,500
-30:3088,-2344,-503
-30:3088,-2344,501
-30:3089,-2343,-502
-30:3089,-2343,502
-30:3090,-2342,-501
-33:3090,-2342,503
-30:3094,-2338,-497
-30:3094,-2338,507
-30:3095,-2337,-496
-30:3095,-2337,508
-30:3096,-2336,-495
-30:3096,-2336,509
-30:3097,-2335,-494
-44:3101,2357,514
-30:3157,2426,556
-30:3158,2542,673
-30:3158,2427,557
-30:3159,2543,674
-64:3159,2428,558
-41:3210,2479,608
-62:3246,2516,647
-</Mussa>