+ <section ref="./mussagl_manual.html#obtaining-input-data-continued" title="Obtaining Input Data - Continued">
+ <section ref="./mussagl_manual.html#ucsc-genome-browser-method" title="UCSC Genome Browser Method" >
+ <section ref="./mussagl_manual.html#step-1-find-smn1" title="Step 1 - Find SMN1"/>
+ <section ref="./mussagl_manual.html#step-2-download-cds-utr-sequence-for-annotations" title="Step 2 - Download CDS/UTR sequence for annotations"/>
+ <section ref="./mussagl_manual.html#step-3-download-gene-and-upstream-downstream-sequence" title="Step 3 - Download gene and upstream/downstream sequence"/>
+ <section ref="./mussagl_manual.html#step-4-same-similar-related-gene-other-species" title="Step 4 - Same/similar/related gene other species."/>
+ <section ref="./mussagl_manual.html#step-5-create-analysis" title="Step 5 - Create Analysis"/>
+ </section>
+ </section>
+
+
+ <section ref="./mussagl_manual.html#understanding-mussa" title="Understanding Mussa"/>
+ <section ref="./mussagl_manual.html#command-line" title="Command Line"/>
+ <section ref="./mussagl_manual.html#performance" title="Performance">
+ <section ref="./mussagl_manual.html#algorithm-behavior" title="Algorithm Behavior"/>
+ <section ref="./mussagl_manual.html#repeats" title="Repeats"/>
+ </section>
+ <section ref="./mussagl_manual.html#details" title="Details">
+ <section ref="./mussagl_manual.html#case-conservation-track-suddenly-stops" title="Case: Conservation track suddenly stops"/>
+ </section>
+ <section ref="./mussagl_manual.html#python-interpreter" title="Python Interpreter"/>
+ </section>
+
+
+