-/* Generated by Cython 0.14.1 on Thu Nov 17 22:34:01 2011 */
+/* Generated by Cython 0.16 on Tue Nov 20 16:56:59 2012 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
#ifndef Py_PYTHON_H
#error Python headers needed to compile C extensions, please install development version of Python.
+#elif PY_VERSION_HEX < 0x02040000
+ #error Cython requires Python 2.4+.
#else
-
#include <stddef.h> /* For offsetof */
#ifndef offsetof
#define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
#define PY_LONG_LONG LONG_LONG
#endif
-#if PY_VERSION_HEX < 0x02040000
- #define METH_COEXIST 0
- #define PyDict_CheckExact(op) (Py_TYPE(op) == &PyDict_Type)
- #define PyDict_Contains(d,o) PySequence_Contains(d,o)
+#ifndef Py_HUGE_VAL
+ #define Py_HUGE_VAL HUGE_VAL
+#endif
+
+#ifdef PYPY_VERSION
+#define CYTHON_COMPILING_IN_PYPY 1
+#define CYTHON_COMPILING_IN_CPYTHON 0
+#else
+#define CYTHON_COMPILING_IN_PYPY 0
+#define CYTHON_COMPILING_IN_CPYTHON 1
+#endif
+
+#if CYTHON_COMPILING_IN_PYPY
+ #define __Pyx_PyCFunction_Call PyObject_Call
+#else
+ #define __Pyx_PyCFunction_Call PyCFunction_Call
#endif
#if PY_VERSION_HEX < 0x02050000
#define PY_SSIZE_T_MIN INT_MIN
#define PY_FORMAT_SIZE_T ""
#define PyInt_FromSsize_t(z) PyInt_FromLong(z)
- #define PyInt_AsSsize_t(o) PyInt_AsLong(o)
+ #define PyInt_AsSsize_t(o) __Pyx_PyInt_AsInt(o)
#define PyNumber_Index(o) PyNumber_Int(o)
#define PyIndex_Check(o) PyNumber_Check(o)
#define PyErr_WarnEx(category, message, stacklevel) PyErr_Warn(category, message)
+ #define __PYX_BUILD_PY_SSIZE_T "i"
+#else
+ #define __PYX_BUILD_PY_SSIZE_T "n"
#endif
#if PY_VERSION_HEX < 0x02060000
#define PyBUF_F_CONTIGUOUS (0x0040 | PyBUF_STRIDES)
#define PyBUF_ANY_CONTIGUOUS (0x0080 | PyBUF_STRIDES)
#define PyBUF_INDIRECT (0x0100 | PyBUF_STRIDES)
+ #define PyBUF_RECORDS (PyBUF_STRIDES | PyBUF_FORMAT | PyBUF_WRITABLE)
+ #define PyBUF_FULL (PyBUF_INDIRECT | PyBUF_FORMAT | PyBUF_WRITABLE)
+ typedef int (*getbufferproc)(PyObject *, Py_buffer *, int);
+ typedef void (*releasebufferproc)(PyObject *, Py_buffer *);
#endif
#if PY_MAJOR_VERSION < 3
#define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
+ #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \
+ PyCode_New(a, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
#else
#define __Pyx_BUILTIN_MODULE_NAME "builtins"
+ #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \
+ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
+#endif
+
+#if PY_MAJOR_VERSION < 3 && PY_MINOR_VERSION < 6
+ #define PyUnicode_FromString(s) PyUnicode_Decode(s, strlen(s), "UTF-8", "strict")
#endif
#if PY_MAJOR_VERSION >= 3
#define Py_TPFLAGS_HAVE_NEWBUFFER 0
#endif
+
+#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_GET_LENGTH)
+ #define CYTHON_PEP393_ENABLED 1
+ #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
+ #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
+#else
+ #define CYTHON_PEP393_ENABLED 0
+ #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
+ #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
+#endif
+
#if PY_MAJOR_VERSION >= 3
#define PyBaseString_Type PyUnicode_Type
#define PyStringObject PyUnicodeObject
#define PyBoolObject PyLongObject
#endif
-
-#if PY_MAJOR_VERSION >= 3
- #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
- #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
+#if PY_VERSION_HEX < 0x03020000
+ typedef long Py_hash_t;
+ #define __Pyx_PyInt_FromHash_t PyInt_FromLong
+ #define __Pyx_PyInt_AsHash_t PyInt_AsLong
#else
- #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
- #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
+ #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
+ #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t
#endif
#if (PY_MAJOR_VERSION < 3) || (PY_VERSION_HEX >= 0x03010300)
#define __Pyx_DOCSTR(n) (n)
#endif
-#ifdef __cplusplus
-#define __PYX_EXTERN_C extern "C"
+#if PY_MAJOR_VERSION >= 3
+ #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
+ #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
#else
-#define __PYX_EXTERN_C extern
+ #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
+ #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
+#endif
+
+#ifndef __PYX_EXTERN_C
+ #ifdef __cplusplus
+ #define __PYX_EXTERN_C extern "C"
+ #else
+ #define __PYX_EXTERN_C extern
+ #endif
#endif
#if defined(WIN32) || defined(MS_WINDOWS)
#define _USE_MATH_DEFINES
#endif
#include <math.h>
+#define __PYX_HAVE__TabProxies
#define __PYX_HAVE_API__TabProxies
#include "stdlib.h"
#include "string.h"
#include "stdint.h"
#include "stdio.h"
#include "pythread.h"
+#ifdef _OPENMP
+#include <omp.h>
+#endif /* _OPENMP */
#ifdef PYREX_WITHOUT_ASSERTIONS
#define CYTHON_WITHOUT_ASSERTIONS
# else
# define CYTHON_UNUSED
# endif
-# elif defined(__ICC) || defined(__INTEL_COMPILER)
+# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
# define CYTHON_UNUSED __attribute__ ((__unused__))
# else
# define CYTHON_UNUSED
#define __Pyx_PyBytes_FromUString(s) PyBytes_FromString((char*)s)
#define __Pyx_PyBytes_AsUString(s) ((unsigned char*) PyBytes_AsString(s))
+#define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None)
#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False))
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x);
static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject*);
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
-
+#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
#ifdef __GNUC__
-/* Test for GCC > 2.95 */
-#if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))
-#define likely(x) __builtin_expect(!!(x), 1)
-#define unlikely(x) __builtin_expect(!!(x), 0)
-#else /* __GNUC__ > 2 ... */
-#define likely(x) (x)
-#define unlikely(x) (x)
-#endif /* __GNUC__ > 2 ... */
+ /* Test for GCC > 2.95 */
+ #if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))
+ #define likely(x) __builtin_expect(!!(x), 1)
+ #define unlikely(x) __builtin_expect(!!(x), 0)
+ #else /* __GNUC__ > 2 ... */
+ #define likely(x) (x)
+ #define unlikely(x) (x)
+ #endif /* __GNUC__ > 2 ... */
#else /* __GNUC__ */
-#define likely(x) (x)
-#define unlikely(x) (x)
+ #define likely(x) (x)
+ #define unlikely(x) (x)
#endif /* __GNUC__ */
static PyObject *__pyx_m;
"complex.pxd",
};
-/* Type declarations */
+/*--- Type declarations ---*/
+struct __pyx_obj_10TabProxies_TupleProxy;
+struct __pyx_obj_10TabProxies_NamedTupleProxy;
+struct __pyx_obj_10TabProxies_VCFProxy;
+struct __pyx_obj_10TabProxies_GTFProxy;
+struct __pyx_obj_10TabProxies_BedProxy;
-/* "TabProxies.pxd":42
+/* "TabProxies.pxd":41
* ctypedef int uint64_t
*
* cdef class TupleProxy: # <<<<<<<<<<<<<<
*
* cdef:
*/
-
struct __pyx_obj_10TabProxies_TupleProxy {
PyObject_HEAD
struct __pyx_vtabstruct_10TabProxies_TupleProxy *__pyx_vtab;
int is_modified;
};
-/* "TabProxies.pxd":78
- * cdef update( self, char * buffer, size_t nbytes )
+
+/* "TabProxies.pxd":69
+ * cdef char * getAttributes( self )
*
* cdef class NamedTupleProxy( TupleProxy) : # <<<<<<<<<<<<<<
* pass
*
*/
-
struct __pyx_obj_10TabProxies_NamedTupleProxy {
struct __pyx_obj_10TabProxies_TupleProxy __pyx_base;
};
-/* "TabProxies.pxd":92
+
+/* "TabProxies.pxd":83
* cdef update( self, char * buffer, size_t nbytes )
*
* cdef class VCFProxy( NamedTupleProxy) : # <<<<<<<<<<<<<<
*
* cdef:
*/
-
struct __pyx_obj_10TabProxies_VCFProxy {
struct __pyx_obj_10TabProxies_NamedTupleProxy __pyx_base;
char *contig;
uint32_t pos;
};
-/* "TabProxies.pxd":61
+
+/* "TabProxies.pxd":60
* cdef update( self, char * buffer, size_t nbytes )
*
* cdef class GTFProxy( TupleProxy) : # <<<<<<<<<<<<<<
*
* cdef:
*/
-
struct __pyx_obj_10TabProxies_GTFProxy {
struct __pyx_obj_10TabProxies_TupleProxy __pyx_base;
- char *contig;
- char *source;
- char *feature;
- uint32_t start;
- uint32_t end;
- char *score;
- char *strand;
- char *frame;
- char *attributes;
+ char *_attributes;
int hasOwnAttributes;
};
-/* "TabProxies.pxd":81
+
+/* "TabProxies.pxd":72
* pass
*
* cdef class BedProxy( NamedTupleProxy) : # <<<<<<<<<<<<<<
*
* cdef:
*/
-
struct __pyx_obj_10TabProxies_BedProxy {
struct __pyx_obj_10TabProxies_NamedTupleProxy __pyx_base;
char *contig;
};
-/* "TabProxies.pyx":20
+
+/* "TabProxies.pyx":84
* return not (buffer <= p < buffer + nbytes )
*
* cdef class TupleProxy: # <<<<<<<<<<<<<<
static struct __pyx_vtabstruct_10TabProxies_TupleProxy *__pyx_vtabptr_10TabProxies_TupleProxy;
-/* "TabProxies.pyx":493
+/* "TabProxies.pyx":571
* self.fromDict( r )
*
* cdef class NamedTupleProxy( TupleProxy ): # <<<<<<<<<<<<<<
static struct __pyx_vtabstruct_10TabProxies_NamedTupleProxy *__pyx_vtabptr_10TabProxies_NamedTupleProxy;
-/* "TabProxies.pyx":578
+/* "TabProxies.pyx":656
* TupleProxy._setindex(self, idx, str(value) )
*
* cdef class VCFProxy( NamedTupleProxy ): # <<<<<<<<<<<<<<
static struct __pyx_vtabstruct_10TabProxies_VCFProxy *__pyx_vtabptr_10TabProxies_VCFProxy;
-/* "TabProxies.pyx":512
+/* "TabProxies.pyx":590
* return f( self.fields[idx] )
*
* cdef class BedProxy( NamedTupleProxy ): # <<<<<<<<<<<<<<
static struct __pyx_vtabstruct_10TabProxies_BedProxy *__pyx_vtabptr_10TabProxies_BedProxy;
-/* "TabProxies.pyx":240
+/* "TabProxies.pyx":326
* return str(v)
*
* cdef class GTFProxy( TupleProxy ): # <<<<<<<<<<<<<<
struct __pyx_vtabstruct_10TabProxies_GTFProxy {
struct __pyx_vtabstruct_10TabProxies_TupleProxy __pyx_base;
+ char *(*getAttributes)(struct __pyx_obj_10TabProxies_GTFProxy *);
};
static struct __pyx_vtabstruct_10TabProxies_GTFProxy *__pyx_vtabptr_10TabProxies_GTFProxy;
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+ #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0)
+ #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0)
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+ #define __Pyx_RefNannyDeclarations
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#define __Pyx_GOTREF(r)
#define __Pyx_GIVEREF(r)
+ #define __Pyx_XINCREF(r) Py_XINCREF(r)
#define __Pyx_XDECREF(r) Py_XDECREF(r)
+ #define __Pyx_XGOTREF(r)
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-#define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);} } while(0)
-#define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r);} } while(0)
+#define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
+#define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)
static PyObject *__Pyx_GetName(PyObject *dict, PyObject *name); /*proto*/
static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
+static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); /*proto*/
+
+#include <string.h>
static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); /*proto*/
-static CYTHON_INLINE int __Pyx_CheckKeywordStrings(PyObject *kwdict,
- const char* function_name, int kw_allowed); /*proto*/
+static CYTHON_INLINE int __Pyx_CheckKeywordStrings(PyObject *kwdict, const char* function_name, int kw_allowed); /*proto*/
static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
-static PyObject *__Pyx_UnpackItem(PyObject *, Py_ssize_t index); /*proto*/
-static int __Pyx_EndUnpack(PyObject *, Py_ssize_t expected); /*proto*/
+static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); /*proto*/
-static void __Pyx_RaiseDoubleKeywordsError(
- const char* func_name, PyObject* kw_name); /*proto*/
+static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); /*proto*/
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+static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], \
+ PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, \
+ const char* function_name); /*proto*/
-static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name); /*proto*/
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-static CYTHON_INLINE long __Pyx_NegateNonNeg(long b) { return unlikely(b < 0) ? b : !b; }
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static CYTHON_INLINE PyObject* __Pyx_PyBoolOrNull_FromLong(long b) {
return unlikely(b < 0) ? NULL : __Pyx_PyBool_FromLong(b);
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static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
PyObject *r;
if (!j) return NULL;
Py_DECREF(j);
return r;
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-
#define __Pyx_GetItemInt_List(o, i, size, to_py_func) (((size) <= sizeof(Py_ssize_t)) ? \
__Pyx_GetItemInt_List_Fast(o, i) : \
__Pyx_GetItemInt_Generic(o, to_py_func(i)))
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static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i) {
if (likely(o != Py_None)) {
if (likely((0 <= i) & (i < PyList_GET_SIZE(o)))) {
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return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
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#define __Pyx_GetItemInt_Tuple(o, i, size, to_py_func) (((size) <= sizeof(Py_ssize_t)) ? \
__Pyx_GetItemInt_Tuple_Fast(o, i) : \
__Pyx_GetItemInt_Generic(o, to_py_func(i)))
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static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) {
if (likely(o != Py_None)) {
if (likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) {
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return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
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-
-
#define __Pyx_GetItemInt(o, i, size, to_py_func) (((size) <= sizeof(Py_ssize_t)) ? \
__Pyx_GetItemInt_Fast(o, i) : \
__Pyx_GetItemInt_Generic(o, to_py_func(i)))
-
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i) {
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- else if (PyTuple_CheckExact(o) && ((0 <= i) & (i < PyTuple_GET_SIZE(o)))) {
- r = PyTuple_GET_ITEM(o, i);
- Py_INCREF(r);
+ if (PyList_CheckExact(o)) {
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+ if (likely((n >= 0) & (n < PyList_GET_SIZE(o)))) {
+ PyObject *r = PyList_GET_ITEM(o, n);
+ Py_INCREF(r);
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}
- else if (Py_TYPE(o)->tp_as_sequence && Py_TYPE(o)->tp_as_sequence->sq_item && (likely(i >= 0))) {
- r = PySequence_GetItem(o, i);
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+ Py_ssize_t n = (likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
+ if (likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) {
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- else {
- r = __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
+ else if (likely(i >= 0)) {
+ PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
+ if (likely(m && m->sq_item)) {
+ return m->sq_item(o, i);
+ }
}
- return r;
+ return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
}
static double __Pyx__PyObject_AsDouble(PyObject* obj); /* proto */
-
#define __Pyx_PyObject_AsDouble(obj) \
- ((likely(PyFloat_CheckExact(obj))) ? \
- PyFloat_AS_DOUBLE(obj) : __Pyx__PyObject_AsDouble(obj))
+((likely(PyFloat_CheckExact(obj))) ? \
+ PyFloat_AS_DOUBLE(obj) : __Pyx__PyObject_AsDouble(obj))
static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
-static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list); /*proto*/
+static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, long level); /*proto*/
-static CYTHON_INLINE PyObject *__Pyx_PyInt_to_py_uint32_t(uint32_t);
+static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); /*proto*/
+
+static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); /*proto*/
+
+#if PY_MAJOR_VERSION >= 3
+#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
+#else
+#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
+#endif
static CYTHON_INLINE uint32_t __Pyx_PyInt_from_py_uint32_t(PyObject *);
+static CYTHON_INLINE PyObject *__Pyx_PyInt_to_py_uint32_t(uint32_t);
+
static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject *);
static CYTHON_INLINE unsigned short __Pyx_PyInt_AsUnsignedShort(PyObject *);
static CYTHON_INLINE signed PY_LONG_LONG __Pyx_PyInt_AsSignedLongLong(PyObject *);
-static void __Pyx_WriteUnraisable(const char *name); /*proto*/
+static void __Pyx_WriteUnraisable(const char *name, int clineno,
+ int lineno, const char *filename); /*proto*/
+
+static int __Pyx_check_binary_version(void);
static int __Pyx_SetVtable(PyObject *dict, void *vtable); /*proto*/
-static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, long size, int strict); /*proto*/
+#if !defined(__Pyx_PyIdentifier_FromString)
+#if PY_MAJOR_VERSION < 3
+ #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s)
+#else
+ #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s)
+#endif
+#endif
+
+static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); /*proto*/
static PyObject *__Pyx_ImportModule(const char *name); /*proto*/
-static void __Pyx_AddTraceback(const char *funcname); /*proto*/
+typedef struct {
+ int code_line;
+ PyCodeObject* code_object;
+} __Pyx_CodeObjectCacheEntry;
+struct __Pyx_CodeObjectCache {
+ int count;
+ int max_count;
+ __Pyx_CodeObjectCacheEntry* entries;
+};
+static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
+static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
+static PyCodeObject *__pyx_find_code_object(int code_line);
+static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);
+
+static void __Pyx_AddTraceback(const char *funcname, int c_line,
+ int py_line, const char *filename); /*proto*/
static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); /*proto*/
-/* Module declarations from cpython.version */
-/* Module declarations from cpython.ref */
-/* Module declarations from cpython.exc */
+/* Module declarations from 'cpython.version' */
+
+/* Module declarations from 'cpython.ref' */
-/* Module declarations from cpython.module */
+/* Module declarations from 'cpython.exc' */
-/* Module declarations from cpython.mem */
+/* Module declarations from 'cpython.module' */
-/* Module declarations from cpython.tuple */
+/* Module declarations from 'cpython.mem' */
-/* Module declarations from cpython.list */
+/* Module declarations from 'cpython.tuple' */
-/* Module declarations from libc.stdio */
+/* Module declarations from 'cpython.list' */
-/* Module declarations from cpython.object */
+/* Module declarations from 'libc.stdio' */
-/* Module declarations from cpython.sequence */
+/* Module declarations from 'cpython.object' */
-/* Module declarations from cpython.mapping */
+/* Module declarations from 'cpython.sequence' */
-/* Module declarations from cpython.iterator */
+/* Module declarations from 'cpython.mapping' */
-/* Module declarations from cpython.type */
+/* Module declarations from 'cpython.iterator' */
-/* Module declarations from cpython.number */
+/* Module declarations from 'cpython.type' */
-/* Module declarations from cpython.int */
+/* Module declarations from 'cpython.number' */
-/* Module declarations from __builtin__ */
+/* Module declarations from 'cpython.int' */
-/* Module declarations from cpython.bool */
+/* Module declarations from '__builtin__' */
+/* Module declarations from 'cpython.bool' */
static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0;
-/* Module declarations from cpython.long */
-/* Module declarations from cpython.float */
+/* Module declarations from 'cpython.long' */
-/* Module declarations from __builtin__ */
+/* Module declarations from 'cpython.float' */
-/* Module declarations from cpython.complex */
+/* Module declarations from '__builtin__' */
+/* Module declarations from 'cpython.complex' */
static PyTypeObject *__pyx_ptype_7cpython_7complex_complex = 0;
-/* Module declarations from cpython.string */
-/* Module declarations from cpython.unicode */
+/* Module declarations from 'cpython.string' */
-/* Module declarations from cpython.dict */
+/* Module declarations from 'cpython.unicode' */
-/* Module declarations from cpython.instance */
+/* Module declarations from 'cpython.dict' */
-/* Module declarations from cpython.function */
+/* Module declarations from 'cpython.instance' */
-/* Module declarations from cpython.method */
+/* Module declarations from 'cpython.function' */
-/* Module declarations from cpython.weakref */
+/* Module declarations from 'cpython.method' */
-/* Module declarations from cpython.getargs */
+/* Module declarations from 'cpython.weakref' */
-/* Module declarations from cpython.pythread */
+/* Module declarations from 'cpython.getargs' */
-/* Module declarations from cpython.cobject */
+/* Module declarations from 'cpython.pythread' */
-/* Module declarations from cpython.oldbuffer */
+/* Module declarations from 'cpython.pystate' */
-/* Module declarations from cpython.set */
+/* Module declarations from 'cpython.cobject' */
-/* Module declarations from cpython.buffer */
+/* Module declarations from 'cpython.oldbuffer' */
-/* Module declarations from cpython.bytes */
+/* Module declarations from 'cpython.set' */
-/* Module declarations from cpython.pycapsule */
+/* Module declarations from 'cpython.buffer' */
-/* Module declarations from cpython */
+/* Module declarations from 'cpython.bytes' */
-/* Module declarations from TabProxies */
+/* Module declarations from 'cpython.pycapsule' */
+/* Module declarations from 'cpython' */
+
+/* Module declarations from 'TabProxies' */
static PyTypeObject *__pyx_ptype_10TabProxies_TupleProxy = 0;
static PyTypeObject *__pyx_ptype_10TabProxies_GTFProxy = 0;
static PyTypeObject *__pyx_ptype_10TabProxies_NamedTupleProxy = 0;
static PyTypeObject *__pyx_ptype_10TabProxies_BedProxy = 0;
static PyTypeObject *__pyx_ptype_10TabProxies_VCFProxy = 0;
-static char *__pyx_f_10TabProxies_nextItem(char *); /*proto*/
+static PyObject *__pyx_v_10TabProxies__FILENAME_ENCODING = 0;
+static PyObject *__pyx_f_10TabProxies__force_bytes(PyObject *); /*proto*/
+static PyObject *__pyx_f_10TabProxies__force_str(PyObject *); /*proto*/
static char *__pyx_f_10TabProxies_StrOrEmpty(char *); /*proto*/
static int __pyx_f_10TabProxies_isNew(char *, char *, size_t); /*proto*/
#define __Pyx_MODULE_NAME "TabProxies"
-static int __pyx_module_is_main_TabProxies = 0;
+int __pyx_module_is_main_TabProxies = 0;
-/* Implementation of TabProxies */
+/* Implementation of 'TabProxies' */
+static PyObject *__pyx_builtin_TypeError;
static PyObject *__pyx_builtin_ValueError;
static PyObject *__pyx_builtin_IndexError;
static PyObject *__pyx_builtin_range;
static PyObject *__pyx_builtin_StopIteration;
static PyObject *__pyx_builtin_xrange;
-static PyObject *__pyx_builtin_TypeError;
static PyObject *__pyx_builtin_AttributeError;
static PyObject *__pyx_builtin_KeyError;
-static char __pyx_k_1[] = "malformatted entry at %s";
-static char __pyx_k_2[] = "";
-static char __pyx_k_3[] = "out of memory";
-static char __pyx_k_5[] = "incomplete line at %s";
-static char __pyx_k_7[] = "row too large - more than %i fields";
-static char __pyx_k_8[] = "list index out of range";
-static char __pyx_k_10[] = "list index out of range %i >= %i";
-static char __pyx_k_14[] = "\t";
-static char __pyx_k_16[] = ".";
-static char __pyx_k_17[] = "\"%s\"";
-static char __pyx_k_18[] = ";";
-static char __pyx_k_20[] = " ";
-static char __pyx_k_22[] = "\"";
-static char __pyx_k_23[] = "%s \"%s\"";
-static char __pyx_k_24[] = "%s %s";
-static char __pyx_k_25[] = "; ";
-static char __pyx_k_29[] = "'GTFProxy' has no attribute '%s'";
-static char __pyx_k_30[] = "field %s not set";
-static char __pyx_k_31[] = "bed format requires at least three columns";
-static char __pyx_k_33[] = "contig of feature.";
-static char __pyx_k_34[] = "feature name.";
-static char __pyx_k_35[] = "feature source.";
-static char __pyx_k_36[] = "feature start (in 0-based open/closed coordinates).";
-static char __pyx_k_37[] = "feature end (in 0-based open/closed coordinates).";
-static char __pyx_k_38[] = "feature score.";
-static char __pyx_k_39[] = "feature strand.";
-static char __pyx_k_40[] = "feature frame.";
-static char __pyx_k_41[] = "feature attributes (as a string).";
+static int __pyx_pf_10TabProxies_10TupleProxy___cinit__(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self); /* proto */
+static void __pyx_pf_10TabProxies_10TupleProxy_2__dealloc__(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_10TupleProxy_4_getindex(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self, int __pyx_v_index); /* proto */
+static PyObject *__pyx_pf_10TabProxies_10TupleProxy_6__getitem__(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
+static PyObject *__pyx_pf_10TabProxies_10TupleProxy_8_setindex(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */
+static int __pyx_pf_10TabProxies_10TupleProxy_10__setitem__(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */
+static Py_ssize_t __pyx_pf_10TabProxies_10TupleProxy_12__len__(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_10TupleProxy_14__iter__(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_10TupleProxy_16__next__(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_10TupleProxy_18__str__(struct __pyx_obj_10TabProxies_TupleProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_toDot(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_v); /* proto */
+static PyObject *__pyx_pf_10TabProxies_2quote(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_v); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy___cinit__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static void __pyx_pf_10TabProxies_8GTFProxy_2__dealloc__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_6contig___get__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy_6contig_2__set__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_6source___get__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy_6source_2__set__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_7feature___get__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy_7feature_2__set__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_5start___get__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy_5start_2__set__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_3end___get__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy_3end_2__set__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_5score___get__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy_5score_2__set__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_6strand___get__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy_6strand_2__set__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_5frame___get__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy_5frame_2__set__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_10attributes___get__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8GTFProxy_10attributes_2__set__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_4asDict(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_6fromDict(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_d); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_8__str__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_10invert(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, int __pyx_v_lcontig); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_12keys(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_14__getitem__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_16__getattr__(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_item); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8GTFProxy_18setAttribute(struct __pyx_obj_10TabProxies_GTFProxy *__pyx_v_self, PyObject *__pyx_v_name, PyObject *__pyx_v_value); /* proto */
+static int __pyx_pf_10TabProxies_15NamedTupleProxy___setattr__(struct __pyx_obj_10TabProxies_NamedTupleProxy *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_10TabProxies_15NamedTupleProxy_2__getattr__(struct __pyx_obj_10TabProxies_NamedTupleProxy *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8BedProxy___str__(struct __pyx_obj_10TabProxies_BedProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8BedProxy_2__setattr__(struct __pyx_obj_10TabProxies_BedProxy *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */
+static int __pyx_pf_10TabProxies_8VCFProxy___cinit__(struct __pyx_obj_10TabProxies_VCFProxy *__pyx_v_self); /* proto */
+static Py_ssize_t __pyx_pf_10TabProxies_8VCFProxy_2__len__(struct __pyx_obj_10TabProxies_VCFProxy *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_10TabProxies_8VCFProxy_3pos___get__(struct __pyx_obj_10TabProxies_VCFProxy *__pyx_v_self); /* proto */
+static int __pyx_pf_10TabProxies_8VCFProxy_4__setattr__(struct __pyx_obj_10TabProxies_VCFProxy *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */
+static char __pyx_k_1[] = "Argument must be string or unicode.";
+static char __pyx_k_3[] = "Argument must be string, bytes or unicode.";
+static char __pyx_k_5[] = "malformatted entry at %s";
+static char __pyx_k_6[] = "";
+static char __pyx_k_7[] = "out of memory";
+static char __pyx_k_9[] = "incomplete line at %s";
+static char __pyx_k_11[] = "row too large - more than %i fields";
+static char __pyx_k_12[] = "list index out of range";
+static char __pyx_k_14[] = "list index out of range %i >= %i";
+static char __pyx_k_18[] = "\t";
+static char __pyx_k_21[] = ".";
+static char __pyx_k_22[] = "\"%s\"";
+static char __pyx_k_32[] = ";";
+static char __pyx_k_34[] = " ";
+static char __pyx_k_36[] = "\"";
+static char __pyx_k_37[] = "%s \"%s\"";
+static char __pyx_k_38[] = "%s %s";
+static char __pyx_k_39[] = "; ";
+static char __pyx_k_41[] = "-";
+static char __pyx_k_44[] = "'GTFProxy' has no attribute '%s'";
+static char __pyx_k_45[] = "field %s not set";
+static char __pyx_k_46[] = "bed format requires at least three columns";
+static char __pyx_k_48[] = "contig of feature.";
+static char __pyx_k_49[] = "feature source.";
+static char __pyx_k_50[] = "feature name.";
+static char __pyx_k_51[] = "feature start (in 0-based open/closed coordinates).";
+static char __pyx_k_52[] = "feature end (in 0-based open/closed coordinates).";
+static char __pyx_k_53[] = "feature score.";
+static char __pyx_k_54[] = "feature strand.";
+static char __pyx_k_55[] = "feature frame.";
+static char __pyx_k_56[] = "feature attributes (as a string).";
+static char __pyx_k_57[] = "getfilesystemencoding";
+static char __pyx_k_60[] = "/ifs/devel/pysam/pysam/TabProxies.pyx";
+static char __pyx_k__v[] = "v";
static char __pyx_k__id[] = "id";
static char __pyx_k__alt[] = "alt";
static char __pyx_k__end[] = "end";
static char __pyx_k__pos[] = "pos";
static char __pyx_k__ref[] = "ref";
-static char __pyx_k__data[] = "data";
+static char __pyx_k__sys[] = "sys";
static char __pyx_k__info[] = "info";
static char __pyx_k__join[] = "join";
static char __pyx_k__name[] = "name";
static char __pyx_k__qual[] = "qual";
+static char __pyx_k__ascii[] = "ascii";
static char __pyx_k__frame[] = "frame";
static char __pyx_k__index[] = "index";
static char __pyx_k__items[] = "items";
static char __pyx_k__toDot[] = "toDot";
static char __pyx_k__types[] = "types";
static char __pyx_k__value[] = "value";
-static char __pyx_k__append[] = "append";
static char __pyx_k__asDict[] = "asDict";
static char __pyx_k__contig[] = "contig";
-static char __pyx_k__fields[] = "fields";
+static char __pyx_k__decode[] = "decode";
+static char __pyx_k__encode[] = "encode";
static char __pyx_k__filter[] = "filter";
static char __pyx_k__format[] = "format";
-static char __pyx_k__nbytes[] = "nbytes";
-static char __pyx_k__offset[] = "offset";
static char __pyx_k__source[] = "source";
static char __pyx_k__strand[] = "strand";
-static char __pyx_k__update[] = "update";
static char __pyx_k__xrange[] = "xrange";
static char __pyx_k____str__[] = "__str__";
static char __pyx_k__feature[] = "feature";
static char __pyx_k__indices[] = "indices";
static char __pyx_k__itemRGB[] = "itemRGB";
-static char __pyx_k__nfields[] = "nfields";
static char __pyx_k__KeyError[] = "KeyError";
static char __pyx_k____main__[] = "__main__";
static char __pyx_k____test__[] = "__test__";
static char __pyx_k__TypeError[] = "TypeError";
static char __pyx_k___getindex[] = "_getindex";
static char __pyx_k___setindex[] = "_setindex";
-static char __pyx_k__bedfields[] = "bedfields";
static char __pyx_k__IndexError[] = "IndexError";
-static char __pyx_k__StringType[] = "StringType";
static char __pyx_k__TabProxies[] = "TabProxies";
static char __pyx_k__ValueError[] = "ValueError";
static char __pyx_k__attributes[] = "attributes";
static char __pyx_k____getattr__[] = "__getattr__";
static char __pyx_k____setitem__[] = "__setitem__";
static char __pyx_k__blockStarts[] = "blockStarts";
-static char __pyx_k__is_modified[] = "is_modified";
-static char __pyx_k__getMaxFields[] = "getMaxFields";
static char __pyx_k__StopIteration[] = "StopIteration";
static char __pyx_k__map_key2field[] = "map_key2field";
static char __pyx_k__AttributeError[] = "AttributeError";
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if (v) {
- return __pyx_pf_10TabProxies_10TupleProxy_5__setitem__(o, i, v);
+ return __pyx_pw_10TabProxies_10TupleProxy_11__setitem__(o, i, v);
}
else {
PyErr_Format(PyExc_NotImplementedError,
}
static PyMethodDef __pyx_methods_10TabProxies_TupleProxy[] = {
- {__Pyx_NAMESTR("_getindex"), (PyCFunction)__pyx_pf_10TabProxies_10TupleProxy_2_getindex, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_10TupleProxy_2_getindex)},
- {__Pyx_NAMESTR("_setindex"), (PyCFunction)__pyx_pf_10TabProxies_10TupleProxy_4_setindex, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_10TupleProxy_4_setindex)},
- {__Pyx_NAMESTR("__next__"), (PyCFunction)__pyx_pf_10TabProxies_10TupleProxy_8__next__, METH_NOARGS|METH_COEXIST, __Pyx_DOCSTR(__pyx_doc_10TabProxies_10TupleProxy_8__next__)},
+ {__Pyx_NAMESTR("_getindex"), (PyCFunction)__pyx_pw_10TabProxies_10TupleProxy_5_getindex, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_10TupleProxy_4_getindex)},
+ {__Pyx_NAMESTR("_setindex"), (PyCFunction)__pyx_pw_10TabProxies_10TupleProxy_9_setindex, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_10TupleProxy_8_setindex)},
+ {__Pyx_NAMESTR("__next__"), (PyCFunction)__pyx_pw_10TabProxies_10TupleProxy_17__next__, METH_NOARGS|METH_COEXIST, __Pyx_DOCSTR(__pyx_doc_10TabProxies_10TupleProxy_16__next__)},
{0, 0, 0, 0}
};
};
static PySequenceMethods __pyx_tp_as_sequence_TupleProxy = {
- __pyx_pf_10TabProxies_10TupleProxy_6__len__, /*sq_length*/
+ __pyx_pw_10TabProxies_10TupleProxy_13__len__, /*sq_length*/
0, /*sq_concat*/
0, /*sq_repeat*/
__pyx_sq_item_10TabProxies_TupleProxy, /*sq_item*/
};
static PyMappingMethods __pyx_tp_as_mapping_TupleProxy = {
- __pyx_pf_10TabProxies_10TupleProxy_6__len__, /*mp_length*/
- __pyx_pf_10TabProxies_10TupleProxy_3__getitem__, /*mp_subscript*/
+ __pyx_pw_10TabProxies_10TupleProxy_13__len__, /*mp_length*/
+ __pyx_pw_10TabProxies_10TupleProxy_7__getitem__, /*mp_subscript*/
__pyx_mp_ass_subscript_10TabProxies_TupleProxy, /*mp_ass_subscript*/
};
&__pyx_tp_as_mapping_TupleProxy, /*tp_as_mapping*/
0, /*tp_hash*/
0, /*tp_call*/
- __pyx_pf_10TabProxies_10TupleProxy_9__str__, /*tp_str*/
+ __pyx_pw_10TabProxies_10TupleProxy_19__str__, /*tp_str*/
0, /*tp_getattro*/
0, /*tp_setattro*/
&__pyx_tp_as_buffer_TupleProxy, /*tp_as_buffer*/
Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
- __Pyx_DOCSTR("Proxy class for access to parsed row as a tuple.\n\n This class represents a table row for fast read-access.\n\n Access to individual fields is via the [] operator.\n \n Only read-only access is implemented.\n "), /*tp_doc*/
+ __Pyx_DOCSTR("Proxy class for access to parsed row as a tuple.\n\n This class represents a table row for fast read-access.\n\n Access to individual fields is via the [] operator.\n \n Only read-only access is implemented.\n\n "), /*tp_doc*/
0, /*tp_traverse*/
0, /*tp_clear*/
0, /*tp_richcompare*/
0, /*tp_weaklistoffset*/
- __pyx_pf_10TabProxies_10TupleProxy_7__iter__, /*tp_iter*/
- __pyx_pf_10TabProxies_10TupleProxy_8__next__, /*tp_iternext*/
+ __pyx_pw_10TabProxies_10TupleProxy_15__iter__, /*tp_iter*/
+ __pyx_pw_10TabProxies_10TupleProxy_17__next__, /*tp_iternext*/
__pyx_methods_10TabProxies_TupleProxy, /*tp_methods*/
0, /*tp_members*/
0, /*tp_getset*/
if (!o) return 0;
p = ((struct __pyx_obj_10TabProxies_GTFProxy *)o);
p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_10TabProxies_TupleProxy*)__pyx_vtabptr_10TabProxies_GTFProxy;
- if (__pyx_pf_10TabProxies_8GTFProxy___cinit__(o, __pyx_empty_tuple, NULL) < 0) {
+ if (__pyx_pw_10TabProxies_8GTFProxy_1__cinit__(o, __pyx_empty_tuple, NULL) < 0) {
Py_DECREF(o); o = 0;
}
return o;
PyObject *etype, *eval, *etb;
PyErr_Fetch(&etype, &eval, &etb);
++Py_REFCNT(o);
- __pyx_pf_10TabProxies_8GTFProxy_1__dealloc__(o);
+ __pyx_pw_10TabProxies_8GTFProxy_3__dealloc__(o);
if (PyErr_Occurred()) PyErr_WriteUnraisable(o);
--Py_REFCNT(o);
PyErr_Restore(etype, eval, etb);
PyObject *v = PyObject_GenericGetAttr(o, n);
if (!v && PyErr_ExceptionMatches(PyExc_AttributeError)) {
PyErr_Clear();
- v = __pyx_pf_10TabProxies_8GTFProxy_8__getattr__(o, n);
+ v = __pyx_pw_10TabProxies_8GTFProxy_17__getattr__(o, n);
}
return v;
}
static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_contig(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8GTFProxy_6contig___get__(o);
+ return __pyx_pw_10TabProxies_8GTFProxy_6contig_1__get__(o);
}
static int __pyx_setprop_10TabProxies_8GTFProxy_contig(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_6contig_1__set__(o, v);
+ return __pyx_pw_10TabProxies_8GTFProxy_6contig_3__set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
}
-static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_feature(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8GTFProxy_7feature___get__(o);
+static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_source(PyObject *o, void *x) {
+ return __pyx_pw_10TabProxies_8GTFProxy_6source_1__get__(o);
}
-static int __pyx_setprop_10TabProxies_8GTFProxy_feature(PyObject *o, PyObject *v, void *x) {
+static int __pyx_setprop_10TabProxies_8GTFProxy_source(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_7feature_1__set__(o, v);
+ return __pyx_pw_10TabProxies_8GTFProxy_6source_3__set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
}
-static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_source(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8GTFProxy_6source___get__(o);
+static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_feature(PyObject *o, void *x) {
+ return __pyx_pw_10TabProxies_8GTFProxy_7feature_1__get__(o);
}
-static int __pyx_setprop_10TabProxies_8GTFProxy_source(PyObject *o, PyObject *v, void *x) {
+static int __pyx_setprop_10TabProxies_8GTFProxy_feature(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_6source_1__set__(o, v);
+ return __pyx_pw_10TabProxies_8GTFProxy_7feature_3__set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_start(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8GTFProxy_5start___get__(o);
+ return __pyx_pw_10TabProxies_8GTFProxy_5start_1__get__(o);
}
static int __pyx_setprop_10TabProxies_8GTFProxy_start(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_5start_1__set__(o, v);
+ return __pyx_pw_10TabProxies_8GTFProxy_5start_3__set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_end(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8GTFProxy_3end___get__(o);
+ return __pyx_pw_10TabProxies_8GTFProxy_3end_1__get__(o);
}
static int __pyx_setprop_10TabProxies_8GTFProxy_end(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_3end_1__set__(o, v);
+ return __pyx_pw_10TabProxies_8GTFProxy_3end_3__set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_score(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8GTFProxy_5score___get__(o);
+ return __pyx_pw_10TabProxies_8GTFProxy_5score_1__get__(o);
}
static int __pyx_setprop_10TabProxies_8GTFProxy_score(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_5score_1__set__(o, v);
+ return __pyx_pw_10TabProxies_8GTFProxy_5score_3__set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_strand(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8GTFProxy_6strand___get__(o);
+ return __pyx_pw_10TabProxies_8GTFProxy_6strand_1__get__(o);
}
static int __pyx_setprop_10TabProxies_8GTFProxy_strand(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_6strand_1__set__(o, v);
+ return __pyx_pw_10TabProxies_8GTFProxy_6strand_3__set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_frame(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8GTFProxy_5frame___get__(o);
+ return __pyx_pw_10TabProxies_8GTFProxy_5frame_1__get__(o);
}
static int __pyx_setprop_10TabProxies_8GTFProxy_frame(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_5frame_1__set__(o, v);
+ return __pyx_pw_10TabProxies_8GTFProxy_5frame_3__set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
static PyObject *__pyx_getprop_10TabProxies_8GTFProxy_attributes(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8GTFProxy_10attributes___get__(o);
+ return __pyx_pw_10TabProxies_8GTFProxy_10attributes_1__get__(o);
}
static int __pyx_setprop_10TabProxies_8GTFProxy_attributes(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_10attributes_1__set__(o, v);
+ return __pyx_pw_10TabProxies_8GTFProxy_10attributes_3__set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
static PyMethodDef __pyx_methods_10TabProxies_GTFProxy[] = {
- {__Pyx_NAMESTR("asDict"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_2asDict, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_2asDict)},
- {__Pyx_NAMESTR("fromDict"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_3fromDict, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_3fromDict)},
- {__Pyx_NAMESTR("invert"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_5invert, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_5invert)},
- {__Pyx_NAMESTR("keys"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_6keys, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_6keys)},
- {__Pyx_NAMESTR("__getattr__"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_8__getattr__, METH_O|METH_COEXIST, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_8__getattr__)},
- {__Pyx_NAMESTR("setAttribute"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_9setAttribute, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_9setAttribute)},
+ {__Pyx_NAMESTR("asDict"), (PyCFunction)__pyx_pw_10TabProxies_8GTFProxy_5asDict, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_4asDict)},
+ {__Pyx_NAMESTR("fromDict"), (PyCFunction)__pyx_pw_10TabProxies_8GTFProxy_7fromDict, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_6fromDict)},
+ {__Pyx_NAMESTR("invert"), (PyCFunction)__pyx_pw_10TabProxies_8GTFProxy_11invert, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_10invert)},
+ {__Pyx_NAMESTR("keys"), (PyCFunction)__pyx_pw_10TabProxies_8GTFProxy_13keys, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_12keys)},
+ {__Pyx_NAMESTR("__getattr__"), (PyCFunction)__pyx_pw_10TabProxies_8GTFProxy_17__getattr__, METH_O|METH_COEXIST, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_16__getattr__)},
+ {__Pyx_NAMESTR("setAttribute"), (PyCFunction)__pyx_pw_10TabProxies_8GTFProxy_19setAttribute, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_18setAttribute)},
{0, 0, 0, 0}
};
static struct PyGetSetDef __pyx_getsets_10TabProxies_GTFProxy[] = {
- {(char *)"contig", __pyx_getprop_10TabProxies_8GTFProxy_contig, __pyx_setprop_10TabProxies_8GTFProxy_contig, __Pyx_DOCSTR(__pyx_k_33), 0},
- {(char *)"feature", __pyx_getprop_10TabProxies_8GTFProxy_feature, __pyx_setprop_10TabProxies_8GTFProxy_feature, __Pyx_DOCSTR(__pyx_k_34), 0},
- {(char *)"source", __pyx_getprop_10TabProxies_8GTFProxy_source, __pyx_setprop_10TabProxies_8GTFProxy_source, __Pyx_DOCSTR(__pyx_k_35), 0},
- {(char *)"start", __pyx_getprop_10TabProxies_8GTFProxy_start, __pyx_setprop_10TabProxies_8GTFProxy_start, __Pyx_DOCSTR(__pyx_k_36), 0},
- {(char *)"end", __pyx_getprop_10TabProxies_8GTFProxy_end, __pyx_setprop_10TabProxies_8GTFProxy_end, __Pyx_DOCSTR(__pyx_k_37), 0},
- {(char *)"score", __pyx_getprop_10TabProxies_8GTFProxy_score, __pyx_setprop_10TabProxies_8GTFProxy_score, __Pyx_DOCSTR(__pyx_k_38), 0},
- {(char *)"strand", __pyx_getprop_10TabProxies_8GTFProxy_strand, __pyx_setprop_10TabProxies_8GTFProxy_strand, __Pyx_DOCSTR(__pyx_k_39), 0},
- {(char *)"frame", __pyx_getprop_10TabProxies_8GTFProxy_frame, __pyx_setprop_10TabProxies_8GTFProxy_frame, __Pyx_DOCSTR(__pyx_k_40), 0},
- {(char *)"attributes", __pyx_getprop_10TabProxies_8GTFProxy_attributes, __pyx_setprop_10TabProxies_8GTFProxy_attributes, __Pyx_DOCSTR(__pyx_k_41), 0},
+ {(char *)"contig", __pyx_getprop_10TabProxies_8GTFProxy_contig, __pyx_setprop_10TabProxies_8GTFProxy_contig, __Pyx_DOCSTR(__pyx_k_48), 0},
+ {(char *)"source", __pyx_getprop_10TabProxies_8GTFProxy_source, __pyx_setprop_10TabProxies_8GTFProxy_source, __Pyx_DOCSTR(__pyx_k_49), 0},
+ {(char *)"feature", __pyx_getprop_10TabProxies_8GTFProxy_feature, __pyx_setprop_10TabProxies_8GTFProxy_feature, __Pyx_DOCSTR(__pyx_k_50), 0},
+ {(char *)"start", __pyx_getprop_10TabProxies_8GTFProxy_start, __pyx_setprop_10TabProxies_8GTFProxy_start, __Pyx_DOCSTR(__pyx_k_51), 0},
+ {(char *)"end", __pyx_getprop_10TabProxies_8GTFProxy_end, __pyx_setprop_10TabProxies_8GTFProxy_end, __Pyx_DOCSTR(__pyx_k_52), 0},
+ {(char *)"score", __pyx_getprop_10TabProxies_8GTFProxy_score, __pyx_setprop_10TabProxies_8GTFProxy_score, __Pyx_DOCSTR(__pyx_k_53), 0},
+ {(char *)"strand", __pyx_getprop_10TabProxies_8GTFProxy_strand, __pyx_setprop_10TabProxies_8GTFProxy_strand, __Pyx_DOCSTR(__pyx_k_54), 0},
+ {(char *)"frame", __pyx_getprop_10TabProxies_8GTFProxy_frame, __pyx_setprop_10TabProxies_8GTFProxy_frame, __Pyx_DOCSTR(__pyx_k_55), 0},
+ {(char *)"attributes", __pyx_getprop_10TabProxies_8GTFProxy_attributes, __pyx_setprop_10TabProxies_8GTFProxy_attributes, __Pyx_DOCSTR(__pyx_k_56), 0},
{0, 0, 0, 0, 0}
};
static PyMappingMethods __pyx_tp_as_mapping_GTFProxy = {
0, /*mp_length*/
- __pyx_pf_10TabProxies_8GTFProxy_7__getitem__, /*mp_subscript*/
+ __pyx_pw_10TabProxies_8GTFProxy_15__getitem__, /*mp_subscript*/
0, /*mp_ass_subscript*/
};
&__pyx_tp_as_mapping_GTFProxy, /*tp_as_mapping*/
0, /*tp_hash*/
0, /*tp_call*/
- __pyx_pf_10TabProxies_8GTFProxy_4__str__, /*tp_str*/
+ __pyx_pw_10TabProxies_8GTFProxy_9__str__, /*tp_str*/
__pyx_tp_getattro_10TabProxies_GTFProxy, /*tp_getattro*/
0, /*tp_setattro*/
&__pyx_tp_as_buffer_GTFProxy, /*tp_as_buffer*/
Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
- __Pyx_DOCSTR("Proxy class for access to GTF fields.\n\n This class represents a GTF entry for fast read-access.\n Write-access has been added as well, though some care must\n be taken. If any of the string fields (contig, source, ...)\n are set, the new value is tied to the lifetime of the\n argument that was supplied.\n\n The only exception is the attributes field when set from\n a dictionary - this field will manage its own memory.\n\n "), /*tp_doc*/
+ __Pyx_DOCSTR("Proxy class for access to GTF fields.\n\n This class represents a GTF entry for fast read-access.\n Write-access has been added as well, though some care must\n be taken. If any of the string fields (contig, source, ...)\n are set, the new value is tied to the lifetime of the\n argument that was supplied.\n\n The only exception is the attributes field when set from\n a dictionary - this field will manage its own memory.\n "), /*tp_doc*/
0, /*tp_traverse*/
0, /*tp_clear*/
0, /*tp_richcompare*/
PyObject *v = PyObject_GenericGetAttr(o, n);
if (!v && PyErr_ExceptionMatches(PyExc_AttributeError)) {
PyErr_Clear();
- v = __pyx_pf_10TabProxies_15NamedTupleProxy_1__getattr__(o, n);
+ v = __pyx_pw_10TabProxies_15NamedTupleProxy_3__getattr__(o, n);
}
return v;
}
static int __pyx_tp_setattro_10TabProxies_NamedTupleProxy(PyObject *o, PyObject *n, PyObject *v) {
if (v) {
- return __pyx_pf_10TabProxies_15NamedTupleProxy___setattr__(o, n, v);
+ return __pyx_pw_10TabProxies_15NamedTupleProxy_1__setattr__(o, n, v);
}
else {
if (__pyx_ptype_10TabProxies_TupleProxy->tp_setattro)
}
static PyMethodDef __pyx_methods_10TabProxies_NamedTupleProxy[] = {
- {__Pyx_NAMESTR("__getattr__"), (PyCFunction)__pyx_pf_10TabProxies_15NamedTupleProxy_1__getattr__, METH_O|METH_COEXIST, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("__getattr__"), (PyCFunction)__pyx_pw_10TabProxies_15NamedTupleProxy_3__getattr__, METH_O|METH_COEXIST, __Pyx_DOCSTR(0)},
{0, 0, 0, 0}
};
static int __pyx_tp_setattro_10TabProxies_BedProxy(PyObject *o, PyObject *n, PyObject *v) {
if (v) {
- return __pyx_pf_10TabProxies_8BedProxy_1__setattr__(o, n, v);
+ return __pyx_pw_10TabProxies_8BedProxy_3__setattr__(o, n, v);
}
else {
if (__pyx_ptype_10TabProxies_NamedTupleProxy->tp_setattro)
&__pyx_tp_as_mapping_BedProxy, /*tp_as_mapping*/
0, /*tp_hash*/
0, /*tp_call*/
- __pyx_pf_10TabProxies_8BedProxy___str__, /*tp_str*/
+ __pyx_pw_10TabProxies_8BedProxy_1__str__, /*tp_str*/
0, /*tp_getattro*/
__pyx_tp_setattro_10TabProxies_BedProxy, /*tp_setattro*/
&__pyx_tp_as_buffer_BedProxy, /*tp_as_buffer*/
if (!o) return 0;
p = ((struct __pyx_obj_10TabProxies_VCFProxy *)o);
p->__pyx_base.__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_10TabProxies_TupleProxy*)__pyx_vtabptr_10TabProxies_VCFProxy;
- if (__pyx_pf_10TabProxies_8VCFProxy___cinit__(o, __pyx_empty_tuple, NULL) < 0) {
+ if (__pyx_pw_10TabProxies_8VCFProxy_1__cinit__(o, __pyx_empty_tuple, NULL) < 0) {
Py_DECREF(o); o = 0;
}
return o;
static int __pyx_tp_setattro_10TabProxies_VCFProxy(PyObject *o, PyObject *n, PyObject *v) {
if (v) {
- return __pyx_pf_10TabProxies_8VCFProxy_2__setattr__(o, n, v);
+ return __pyx_pw_10TabProxies_8VCFProxy_5__setattr__(o, n, v);
}
else {
if (__pyx_ptype_10TabProxies_NamedTupleProxy->tp_setattro)
}
static PyObject *__pyx_getprop_10TabProxies_8VCFProxy_pos(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8VCFProxy_3pos___get__(o);
+ return __pyx_pw_10TabProxies_8VCFProxy_3pos_1__get__(o);
}
static PyMethodDef __pyx_methods_10TabProxies_VCFProxy[] = {
};
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+ p = PyObject_GetAttrString(m, (char *)"RefNannyAPI");
+ if (!p) goto end;
+ r = PyLong_AsVoidPtr(p);
+end:
+ Py_XDECREF(p);
+ Py_XDECREF(m);
+ return (__Pyx_RefNannyAPIStruct *)r;
+}
+#endif /* CYTHON_REFNANNY */
static PyObject *__Pyx_GetName(PyObject *dict, PyObject *name) {
PyObject *result;
result = PyObject_GetAttr(dict, name);
- if (!result)
- PyErr_SetObject(PyExc_NameError, name);
+ if (!result) {
+ if (dict != __pyx_b) {
+ PyErr_Clear();
+ result = PyObject_GetAttr(__pyx_b, name);
+ }
+ if (!result) {
+ PyErr_SetObject(PyExc_NameError, name);
+ }
+ }
return result;
}
static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) {
+#if CYTHON_COMPILING_IN_CPYTHON
PyObject *tmp_type, *tmp_value, *tmp_tb;
PyThreadState *tstate = PyThreadState_GET();
-
tmp_type = tstate->curexc_type;
tmp_value = tstate->curexc_value;
tmp_tb = tstate->curexc_traceback;
Py_XDECREF(tmp_type);
Py_XDECREF(tmp_value);
Py_XDECREF(tmp_tb);
+#else
+ PyErr_Restore(type, value, tb);
+#endif
}
-
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) {
+#if CYTHON_COMPILING_IN_CPYTHON
PyThreadState *tstate = PyThreadState_GET();
*type = tstate->curexc_type;
*value = tstate->curexc_value;
*tb = tstate->curexc_traceback;
-
tstate->curexc_type = 0;
tstate->curexc_value = 0;
tstate->curexc_traceback = 0;
+#else
+ PyErr_Fetch(type, value, tb);
+#endif
}
-
#if PY_MAJOR_VERSION < 3
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb) {
+static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
+ CYTHON_UNUSED PyObject *cause) {
Py_XINCREF(type);
Py_XINCREF(value);
Py_XINCREF(tb);
- /* First, check the traceback argument, replacing None with NULL. */
if (tb == Py_None) {
Py_DECREF(tb);
tb = 0;
"raise: arg 3 must be a traceback or None");
goto raise_error;
}
- /* Next, replace a missing value with None */
if (value == NULL) {
value = Py_None;
Py_INCREF(value);
if (!PyType_Check(type))
#endif
{
- /* Raising an instance. The value should be a dummy. */
if (value != Py_None) {
PyErr_SetString(PyExc_TypeError,
"instance exception may not have a separate value");
goto raise_error;
}
- /* Normalize to raise <class>, <instance> */
Py_DECREF(value);
value = type;
#if PY_VERSION_HEX < 0x02050000
}
#endif
}
-
__Pyx_ErrRestore(type, value, tb);
return;
raise_error:
Py_XDECREF(tb);
return;
}
-
#else /* Python 3+ */
-
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb) {
+static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
if (tb == Py_None) {
tb = 0;
} else if (tb && !PyTraceBack_Check(tb)) {
}
if (value == Py_None)
value = 0;
-
if (PyExceptionInstance_Check(type)) {
if (value) {
PyErr_SetString(PyExc_TypeError,
"raise: exception class must be a subclass of BaseException");
goto bad;
}
-
+ if (cause) {
+ PyObject *fixed_cause;
+ if (PyExceptionClass_Check(cause)) {
+ fixed_cause = PyObject_CallObject(cause, NULL);
+ if (fixed_cause == NULL)
+ goto bad;
+ }
+ else if (PyExceptionInstance_Check(cause)) {
+ fixed_cause = cause;
+ Py_INCREF(fixed_cause);
+ }
+ else {
+ PyErr_SetString(PyExc_TypeError,
+ "exception causes must derive from "
+ "BaseException");
+ goto bad;
+ }
+ if (!value) {
+ value = PyObject_CallObject(type, NULL);
+ }
+ PyException_SetCause(value, fixed_cause);
+ }
PyErr_SetObject(type, value);
-
if (tb) {
PyThreadState *tstate = PyThreadState_GET();
PyObject* tmp_tb = tstate->curexc_traceback;
Py_XDECREF(tmp_tb);
}
}
-
bad:
return;
}
Py_ssize_t num_found)
{
Py_ssize_t num_expected;
- const char *number, *more_or_less;
-
+ const char *more_or_less;
if (num_found < num_min) {
num_expected = num_min;
more_or_less = "at least";
if (exact) {
more_or_less = "exactly";
}
- number = (num_expected == 1) ? "" : "s";
PyErr_Format(PyExc_TypeError,
- #if PY_VERSION_HEX < 0x02050000
- "%s() takes %s %d positional argument%s (%d given)",
- #else
- "%s() takes %s %zd positional argument%s (%zd given)",
- #endif
- func_name, more_or_less, num_expected, number, num_found);
+ "%s() takes %s %"PY_FORMAT_SIZE_T"d positional argument%s (%"PY_FORMAT_SIZE_T"d given)",
+ func_name, more_or_less, num_expected,
+ (num_expected == 1) ? "" : "s", num_found);
}
static CYTHON_INLINE int __Pyx_CheckKeywordStrings(
#if PY_MAJOR_VERSION < 3
if (unlikely(!PyString_CheckExact(key)) && unlikely(!PyString_Check(key)))
#else
- if (unlikely(!PyUnicode_CheckExact(key)) && unlikely(!PyUnicode_Check(key)))
+ if (unlikely(!PyUnicode_Check(key)))
#endif
goto invalid_keyword_type;
}
static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
PyErr_Format(PyExc_ValueError,
- #if PY_VERSION_HEX < 0x02050000
- "need more than %d value%s to unpack", (int)index,
- #else
- "need more than %zd value%s to unpack", index,
- #endif
- (index == 1) ? "" : "s");
+ "need more than %"PY_FORMAT_SIZE_T"d value%s to unpack",
+ index, (index == 1) ? "" : "s");
}
static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
PyErr_Format(PyExc_ValueError,
- #if PY_VERSION_HEX < 0x02050000
- "too many values to unpack (expected %d)", (int)expected);
- #else
- "too many values to unpack (expected %zd)", expected);
- #endif
-}
-
-static PyObject *__Pyx_UnpackItem(PyObject *iter, Py_ssize_t index) {
- PyObject *item;
- if (!(item = PyIter_Next(iter))) {
- if (!PyErr_Occurred()) {
- __Pyx_RaiseNeedMoreValuesError(index);
- }
- }
- return item;
+ "too many values to unpack (expected %"PY_FORMAT_SIZE_T"d)", expected);
}
-static int __Pyx_EndUnpack(PyObject *iter, Py_ssize_t expected) {
- PyObject *item;
- if ((item = PyIter_Next(iter))) {
- Py_DECREF(item);
+static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
+ if (unlikely(retval)) {
+ Py_DECREF(retval);
__Pyx_RaiseTooManyValuesError(expected);
return -1;
+ } else if (PyErr_Occurred()) {
+ if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
+ PyErr_Clear();
+ return 0;
+ } else {
+ return -1;
+ }
}
- else if (!PyErr_Occurred())
- return 0;
- else
- return -1;
+ return 0;
}
static void __Pyx_RaiseDoubleKeywordsError(
Py_ssize_t pos = 0;
PyObject*** name;
PyObject*** first_kw_arg = argnames + num_pos_args;
-
while (PyDict_Next(kwds, &pos, &key, &value)) {
name = first_kw_arg;
while (*name && (**name != key)) name++;
#if PY_MAJOR_VERSION < 3
if (unlikely(!PyString_CheckExact(key)) && unlikely(!PyString_Check(key))) {
#else
- if (unlikely(!PyUnicode_CheckExact(key)) && unlikely(!PyUnicode_Check(key))) {
+ if (unlikely(!PyUnicode_Check(key))) {
#endif
goto invalid_keyword_type;
} else {
if (*name) {
values[name-argnames] = value;
} else {
- /* unexpected keyword found */
for (name=argnames; name != first_kw_arg; name++) {
if (**name == key) goto arg_passed_twice;
#if PY_MAJOR_VERSION >= 3
}
+
static double __Pyx__PyObject_AsDouble(PyObject* obj) {
PyObject* float_value;
if (Py_TYPE(obj)->tp_as_number && Py_TYPE(obj)->tp_as_number->nb_float) {
Py_XINCREF(*value);
Py_XINCREF(*tb);
}
-
static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) {
PyObject *tmp_type, *tmp_value, *tmp_tb;
PyThreadState *tstate = PyThreadState_GET();
Py_XDECREF(tmp_tb);
}
-static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list) {
+static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, long level) {
PyObject *py_import = 0;
PyObject *empty_list = 0;
PyObject *module = 0;
empty_dict = PyDict_New();
if (!empty_dict)
goto bad;
+ #if PY_VERSION_HEX >= 0x02050000
+ {
+ #if PY_MAJOR_VERSION >= 3
+ if (level == -1) {
+ if (strchr(__Pyx_MODULE_NAME, '.')) {
+ /* try package relative import first */
+ PyObject *py_level = PyInt_FromLong(1);
+ if (!py_level)
+ goto bad;
+ module = PyObject_CallFunctionObjArgs(py_import,
+ name, global_dict, empty_dict, list, py_level, NULL);
+ Py_DECREF(py_level);
+ if (!module) {
+ if (!PyErr_ExceptionMatches(PyExc_ImportError))
+ goto bad;
+ PyErr_Clear();
+ }
+ }
+ level = 0; /* try absolute import on failure */
+ }
+ #endif
+ if (!module) {
+ PyObject *py_level = PyInt_FromLong(level);
+ if (!py_level)
+ goto bad;
+ module = PyObject_CallFunctionObjArgs(py_import,
+ name, global_dict, empty_dict, list, py_level, NULL);
+ Py_DECREF(py_level);
+ }
+ }
+ #else
+ if (level>0) {
+ PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4.");
+ goto bad;
+ }
module = PyObject_CallFunctionObjArgs(py_import,
name, global_dict, empty_dict, list, NULL);
+ #endif
bad:
Py_XDECREF(empty_list);
Py_XDECREF(py_import);
return module;
}
-static CYTHON_INLINE PyObject *__Pyx_PyInt_to_py_uint32_t(uint32_t val) {
- const uint32_t neg_one = (uint32_t)-1, const_zero = (uint32_t)0;
- const int is_unsigned = const_zero < neg_one;
- if ((sizeof(uint32_t) == sizeof(char)) ||
- (sizeof(uint32_t) == sizeof(short))) {
- return PyInt_FromLong((long)val);
- } else if ((sizeof(uint32_t) == sizeof(int)) ||
- (sizeof(uint32_t) == sizeof(long))) {
- if (is_unsigned)
- return PyLong_FromUnsignedLong((unsigned long)val);
- else
- return PyInt_FromLong((long)val);
- } else if (sizeof(uint32_t) == sizeof(PY_LONG_LONG)) {
- if (is_unsigned)
- return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG)val);
- else
- return PyLong_FromLongLong((PY_LONG_LONG)val);
+static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
+ if (s1 == s2) {
+ return (equals == Py_EQ);
+ } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
+ if (PyBytes_GET_SIZE(s1) != PyBytes_GET_SIZE(s2)) {
+ return (equals == Py_NE);
+ } else if (PyBytes_GET_SIZE(s1) == 1) {
+ if (equals == Py_EQ)
+ return (PyBytes_AS_STRING(s1)[0] == PyBytes_AS_STRING(s2)[0]);
+ else
+ return (PyBytes_AS_STRING(s1)[0] != PyBytes_AS_STRING(s2)[0]);
+ } else {
+ int result = memcmp(PyBytes_AS_STRING(s1), PyBytes_AS_STRING(s2), (size_t)PyBytes_GET_SIZE(s1));
+ return (equals == Py_EQ) ? (result == 0) : (result != 0);
+ }
+ } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
+ return (equals == Py_NE);
+ } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
+ return (equals == Py_NE);
} else {
- int one = 1; int little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&val;
- return _PyLong_FromByteArray(bytes, sizeof(uint32_t),
- little, !is_unsigned);
+ int result;
+ PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
+ if (!py_result)
+ return -1;
+ result = __Pyx_PyObject_IsTrue(py_result);
+ Py_DECREF(py_result);
+ return result;
+ }
+}
+
+static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
+ if (s1 == s2) {
+ return (equals == Py_EQ);
+ } else if (PyUnicode_CheckExact(s1) & PyUnicode_CheckExact(s2)) {
+ #if CYTHON_PEP393_ENABLED
+ if ((PyUnicode_READY(s1) < 0) || (PyUnicode_READY(s2) < 0))
+ return -1;
+ if (PyUnicode_GET_LENGTH(s1) != PyUnicode_GET_LENGTH(s2)) {
+ return (equals == Py_NE);
+ } else if (PyUnicode_GET_LENGTH(s1) == 1) {
+ Py_UCS4 ch1 = PyUnicode_READ_CHAR(s1, 0);
+ Py_UCS4 ch2 = PyUnicode_READ_CHAR(s2, 0);
+ return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
+ #else
+ if (PyUnicode_GET_SIZE(s1) != PyUnicode_GET_SIZE(s2)) {
+ return (equals == Py_NE);
+ } else if (PyUnicode_GET_SIZE(s1) == 1) {
+ Py_UNICODE ch1 = PyUnicode_AS_UNICODE(s1)[0];
+ Py_UNICODE ch2 = PyUnicode_AS_UNICODE(s2)[0];
+ return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
+ #endif
+ } else {
+ int result = PyUnicode_Compare(s1, s2);
+ if ((result == -1) && unlikely(PyErr_Occurred()))
+ return -1;
+ return (equals == Py_EQ) ? (result == 0) : (result != 0);
+ }
+ } else if ((s1 == Py_None) & PyUnicode_CheckExact(s2)) {
+ return (equals == Py_NE);
+ } else if ((s2 == Py_None) & PyUnicode_CheckExact(s1)) {
+ return (equals == Py_NE);
+ } else {
+ int result;
+ PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
+ if (!py_result)
+ return -1;
+ result = __Pyx_PyObject_IsTrue(py_result);
+ Py_DECREF(py_result);
+ return result;
}
}
}
}
+static CYTHON_INLINE PyObject *__Pyx_PyInt_to_py_uint32_t(uint32_t val) {
+ const uint32_t neg_one = (uint32_t)-1, const_zero = (uint32_t)0;
+ const int is_unsigned = const_zero < neg_one;
+ if ((sizeof(uint32_t) == sizeof(char)) ||
+ (sizeof(uint32_t) == sizeof(short))) {
+ return PyInt_FromLong((long)val);
+ } else if ((sizeof(uint32_t) == sizeof(int)) ||
+ (sizeof(uint32_t) == sizeof(long))) {
+ if (is_unsigned)
+ return PyLong_FromUnsignedLong((unsigned long)val);
+ else
+ return PyInt_FromLong((long)val);
+ } else if (sizeof(uint32_t) == sizeof(PY_LONG_LONG)) {
+ if (is_unsigned)
+ return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG)val);
+ else
+ return PyLong_FromLongLong((PY_LONG_LONG)val);
+ } else {
+ int one = 1; int little = (int)*(unsigned char *)&one;
+ unsigned char *bytes = (unsigned char *)&val;
+ return _PyLong_FromByteArray(bytes, sizeof(uint32_t),
+ little, !is_unsigned);
+ }
+}
+
static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject* x) {
const unsigned char neg_one = (unsigned char)-1, const_zero = 0;
const int is_unsigned = neg_one > const_zero;
"can't convert negative value to unsigned long");
return (unsigned long)-1;
}
- return PyLong_AsUnsignedLong(x);
+ return (unsigned long)PyLong_AsUnsignedLong(x);
} else {
- return PyLong_AsLong(x);
+ return (unsigned long)PyLong_AsLong(x);
}
} else {
unsigned long val;
"can't convert negative value to unsigned PY_LONG_LONG");
return (unsigned PY_LONG_LONG)-1;
}
- return PyLong_AsUnsignedLongLong(x);
+ return (unsigned PY_LONG_LONG)PyLong_AsUnsignedLongLong(x);
} else {
- return PyLong_AsLongLong(x);
+ return (unsigned PY_LONG_LONG)PyLong_AsLongLong(x);
}
} else {
unsigned PY_LONG_LONG val;
"can't convert negative value to long");
return (long)-1;
}
- return PyLong_AsUnsignedLong(x);
+ return (long)PyLong_AsUnsignedLong(x);
} else {
- return PyLong_AsLong(x);
+ return (long)PyLong_AsLong(x);
}
} else {
long val;
"can't convert negative value to PY_LONG_LONG");
return (PY_LONG_LONG)-1;
}
- return PyLong_AsUnsignedLongLong(x);
+ return (PY_LONG_LONG)PyLong_AsUnsignedLongLong(x);
} else {
- return PyLong_AsLongLong(x);
+ return (PY_LONG_LONG)PyLong_AsLongLong(x);
}
} else {
PY_LONG_LONG val;
"can't convert negative value to signed long");
return (signed long)-1;
}
- return PyLong_AsUnsignedLong(x);
+ return (signed long)PyLong_AsUnsignedLong(x);
} else {
- return PyLong_AsLong(x);
+ return (signed long)PyLong_AsLong(x);
}
} else {
signed long val;
"can't convert negative value to signed PY_LONG_LONG");
return (signed PY_LONG_LONG)-1;
}
- return PyLong_AsUnsignedLongLong(x);
+ return (signed PY_LONG_LONG)PyLong_AsUnsignedLongLong(x);
} else {
- return PyLong_AsLongLong(x);
+ return (signed PY_LONG_LONG)PyLong_AsLongLong(x);
}
} else {
signed PY_LONG_LONG val;
}
}
-static void __Pyx_WriteUnraisable(const char *name) {
+static void __Pyx_WriteUnraisable(const char *name, int clineno,
+ int lineno, const char *filename) {
PyObject *old_exc, *old_val, *old_tb;
PyObject *ctx;
__Pyx_ErrFetch(&old_exc, &old_val, &old_tb);
}
}
+static int __Pyx_check_binary_version(void) {
+ char ctversion[4], rtversion[4];
+ PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
+ PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
+ if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
+ char message[200];
+ PyOS_snprintf(message, sizeof(message),
+ "compiletime version %s of module '%.100s' "
+ "does not match runtime version %s",
+ ctversion, __Pyx_MODULE_NAME, rtversion);
+ #if PY_VERSION_HEX < 0x02050000
+ return PyErr_Warn(NULL, message);
+ #else
+ return PyErr_WarnEx(NULL, message, 1);
+ #endif
+ }
+ return 0;
+}
+
static int __Pyx_SetVtable(PyObject *dict, void *vtable) {
#if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3&&PY_MINOR_VERSION==0)
PyObject *ob = PyCapsule_New(vtable, 0, 0);
#ifndef __PYX_HAVE_RT_ImportType
#define __PYX_HAVE_RT_ImportType
static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name,
- long size, int strict)
+ size_t size, int strict)
{
PyObject *py_module = 0;
PyObject *result = 0;
PyObject *py_name = 0;
char warning[200];
-
py_module = __Pyx_ImportModule(module_name);
if (!py_module)
goto bad;
- #if PY_MAJOR_VERSION < 3
- py_name = PyString_FromString(class_name);
- #else
- py_name = PyUnicode_FromString(class_name);
- #endif
+ py_name = __Pyx_PyIdentifier_FromString(class_name);
if (!py_name)
goto bad;
result = PyObject_GetAttr(py_module, py_name);
module_name, class_name);
goto bad;
}
- if (!strict && ((PyTypeObject *)result)->tp_basicsize > size) {
+ if (!strict && (size_t)((PyTypeObject *)result)->tp_basicsize > size) {
PyOS_snprintf(warning, sizeof(warning),
"%s.%s size changed, may indicate binary incompatibility",
module_name, class_name);
#if PY_VERSION_HEX < 0x02050000
- PyErr_Warn(NULL, warning);
+ if (PyErr_Warn(NULL, warning) < 0) goto bad;
#else
- PyErr_WarnEx(NULL, warning, 0);
+ if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
#endif
}
- else if (((PyTypeObject *)result)->tp_basicsize != size) {
+ else if ((size_t)((PyTypeObject *)result)->tp_basicsize != size) {
PyErr_Format(PyExc_ValueError,
"%s.%s has the wrong size, try recompiling",
module_name, class_name);
bad:
Py_XDECREF(py_module);
Py_XDECREF(result);
- return 0;
+ return NULL;
}
#endif
static PyObject *__Pyx_ImportModule(const char *name) {
PyObject *py_name = 0;
PyObject *py_module = 0;
-
- #if PY_MAJOR_VERSION < 3
- py_name = PyString_FromString(name);
- #else
- py_name = PyUnicode_FromString(name);
- #endif
+ py_name = __Pyx_PyIdentifier_FromString(name);
if (!py_name)
goto bad;
py_module = PyImport_Import(py_name);
}
#endif
+static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
+ int start = 0, mid = 0, end = count - 1;
+ if (end >= 0 && code_line > entries[end].code_line) {
+ return count;
+ }
+ while (start < end) {
+ mid = (start + end) / 2;
+ if (code_line < entries[mid].code_line) {
+ end = mid;
+ } else if (code_line > entries[mid].code_line) {
+ start = mid + 1;
+ } else {
+ return mid;
+ }
+ }
+ if (code_line <= entries[mid].code_line) {
+ return mid;
+ } else {
+ return mid + 1;
+ }
+}
+static PyCodeObject *__pyx_find_code_object(int code_line) {
+ PyCodeObject* code_object;
+ int pos;
+ if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
+ return NULL;
+ }
+ pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
+ if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
+ return NULL;
+ }
+ code_object = __pyx_code_cache.entries[pos].code_object;
+ Py_INCREF(code_object);
+ return code_object;
+}
+static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
+ int pos, i;
+ __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
+ if (unlikely(!code_line)) {
+ return;
+ }
+ if (unlikely(!entries)) {
+ entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
+ if (likely(entries)) {
+ __pyx_code_cache.entries = entries;
+ __pyx_code_cache.max_count = 64;
+ __pyx_code_cache.count = 1;
+ entries[0].code_line = code_line;
+ entries[0].code_object = code_object;
+ Py_INCREF(code_object);
+ }
+ return;
+ }
+ pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
+ if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
+ PyCodeObject* tmp = entries[pos].code_object;
+ entries[pos].code_object = code_object;
+ Py_DECREF(tmp);
+ return;
+ }
+ if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
+ int new_max = __pyx_code_cache.max_count + 64;
+ entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
+ __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry));
+ if (unlikely(!entries)) {
+ return;
+ }
+ __pyx_code_cache.entries = entries;
+ __pyx_code_cache.max_count = new_max;
+ }
+ for (i=__pyx_code_cache.count; i>pos; i--) {
+ entries[i] = entries[i-1];
+ }
+ entries[pos].code_line = code_line;
+ entries[pos].code_object = code_object;
+ __pyx_code_cache.count++;
+ Py_INCREF(code_object);
+}
+
#include "compile.h"
#include "frameobject.h"
#include "traceback.h"
-
-static void __Pyx_AddTraceback(const char *funcname) {
+static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
+ const char *funcname, int c_line,
+ int py_line, const char *filename) {
+ PyCodeObject *py_code = 0;
PyObject *py_srcfile = 0;
PyObject *py_funcname = 0;
- PyObject *py_globals = 0;
- PyCodeObject *py_code = 0;
- PyFrameObject *py_frame = 0;
-
#if PY_MAJOR_VERSION < 3
- py_srcfile = PyString_FromString(__pyx_filename);
+ py_srcfile = PyString_FromString(filename);
#else
- py_srcfile = PyUnicode_FromString(__pyx_filename);
+ py_srcfile = PyUnicode_FromString(filename);
#endif
if (!py_srcfile) goto bad;
- if (__pyx_clineno) {
+ if (c_line) {
#if PY_MAJOR_VERSION < 3
- py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, __pyx_clineno);
+ py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
#else
- py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, __pyx_clineno);
+ py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
#endif
}
else {
#endif
}
if (!py_funcname) goto bad;
- py_globals = PyModule_GetDict(__pyx_m);
- if (!py_globals) goto bad;
- py_code = PyCode_New(
+ py_code = __Pyx_PyCode_New(
0, /*int argcount,*/
- #if PY_MAJOR_VERSION >= 3
0, /*int kwonlyargcount,*/
- #endif
0, /*int nlocals,*/
0, /*int stacksize,*/
0, /*int flags,*/
__pyx_empty_bytes, /*PyObject *code,*/
- __pyx_empty_tuple, /*PyObject *consts,*/
- __pyx_empty_tuple, /*PyObject *names,*/
- __pyx_empty_tuple, /*PyObject *varnames,*/
- __pyx_empty_tuple, /*PyObject *freevars,*/
- __pyx_empty_tuple, /*PyObject *cellvars,*/
+ __pyx_empty_tuple, /*PyObject *consts,*/
+ __pyx_empty_tuple, /*PyObject *names,*/
+ __pyx_empty_tuple, /*PyObject *varnames,*/
+ __pyx_empty_tuple, /*PyObject *freevars,*/
+ __pyx_empty_tuple, /*PyObject *cellvars,*/
py_srcfile, /*PyObject *filename,*/
py_funcname, /*PyObject *name,*/
- __pyx_lineno, /*int firstlineno,*/
+ py_line, /*int firstlineno,*/
__pyx_empty_bytes /*PyObject *lnotab*/
);
- if (!py_code) goto bad;
+ Py_DECREF(py_srcfile);
+ Py_DECREF(py_funcname);
+ return py_code;
+bad:
+ Py_XDECREF(py_srcfile);
+ Py_XDECREF(py_funcname);
+ return NULL;
+}
+static void __Pyx_AddTraceback(const char *funcname, int c_line,
+ int py_line, const char *filename) {
+ PyCodeObject *py_code = 0;
+ PyObject *py_globals = 0;
+ PyFrameObject *py_frame = 0;
+ py_code = __pyx_find_code_object(c_line ? c_line : py_line);
+ if (!py_code) {
+ py_code = __Pyx_CreateCodeObjectForTraceback(
+ funcname, c_line, py_line, filename);
+ if (!py_code) goto bad;
+ __pyx_insert_code_object(c_line ? c_line : py_line, py_code);
+ }
+ py_globals = PyModule_GetDict(__pyx_m);
+ if (!py_globals) goto bad;
py_frame = PyFrame_New(
PyThreadState_GET(), /*PyThreadState *tstate,*/
py_code, /*PyCodeObject *code,*/
0 /*PyObject *locals*/
);
if (!py_frame) goto bad;
- py_frame->f_lineno = __pyx_lineno;
+ py_frame->f_lineno = py_line;
PyTraceBack_Here(py_frame);
bad:
- Py_XDECREF(py_srcfile);
- Py_XDECREF(py_funcname);
Py_XDECREF(py_code);
Py_XDECREF(py_frame);
}
return 0;
}
+
/* Type Conversion Functions */
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
projects / pysam.git / blobdiff