-/* Generated by Cython 0.14.1 on Thu Nov 17 22:34:01 2011 */
+/* Generated by Cython 0.13 on Thu May 5 14:57:52 2011 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
#define PyBytes_Repr PyString_Repr
#define PyBytes_Concat PyString_Concat
#define PyBytes_ConcatAndDel PyString_ConcatAndDel
-#endif
-
-#if PY_VERSION_HEX < 0x02060000
#define PySet_Check(obj) PyObject_TypeCheck(obj, &PySet_Type)
#define PyFrozenSet_Check(obj) PyObject_TypeCheck(obj, &PyFrozenSet_Type)
#endif
+
#ifndef PySet_CheckExact
- #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
+# define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
#endif
-#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
-
#if PY_MAJOR_VERSION >= 3
- #define PyIntObject PyLongObject
#define PyInt_Type PyLong_Type
#define PyInt_Check(op) PyLong_Check(op)
#define PyInt_CheckExact(op) PyLong_CheckExact(op)
#endif
#if PY_MAJOR_VERSION >= 3
- #define PyBoolObject PyLongObject
+ #define PyBoolObject PyLongObject
#endif
#define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
#endif
-#if (PY_MAJOR_VERSION < 3) || (PY_VERSION_HEX >= 0x03010300)
- #define __Pyx_PySequence_GetSlice(obj, a, b) PySequence_GetSlice(obj, a, b)
- #define __Pyx_PySequence_SetSlice(obj, a, b, value) PySequence_SetSlice(obj, a, b, value)
- #define __Pyx_PySequence_DelSlice(obj, a, b) PySequence_DelSlice(obj, a, b)
-#else
- #define __Pyx_PySequence_GetSlice(obj, a, b) (unlikely(!(obj)) ? \
- (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), (PyObject*)0) : \
- (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_GetSlice(obj, a, b)) : \
- (PyErr_Format(PyExc_TypeError, "'%.200s' object is unsliceable", (obj)->ob_type->tp_name), (PyObject*)0)))
- #define __Pyx_PySequence_SetSlice(obj, a, b, value) (unlikely(!(obj)) ? \
- (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \
- (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_SetSlice(obj, a, b, value)) : \
- (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice assignment", (obj)->ob_type->tp_name), -1)))
- #define __Pyx_PySequence_DelSlice(obj, a, b) (unlikely(!(obj)) ? \
- (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \
- (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_DelSlice(obj, a, b)) : \
- (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice deletion", (obj)->ob_type->tp_name), -1)))
-#endif
-
#if PY_MAJOR_VERSION >= 3
#define PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func))
#endif
#include "stdio.h"
#include "pythread.h"
-#ifdef PYREX_WITHOUT_ASSERTIONS
-#define CYTHON_WITHOUT_ASSERTIONS
-#endif
-
-
/* inline attribute */
#ifndef CYTHON_INLINE
#if defined(__GNUC__)
#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
#define CYTHON_INLINE inline
#else
- #define CYTHON_INLINE
+ #define CYTHON_INLINE
#endif
#endif
#ifndef CYTHON_UNUSED
# if defined(__GNUC__)
# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
-# define CYTHON_UNUSED __attribute__ ((__unused__))
+# define CYTHON_UNUSED __attribute__ ((__unused__))
# else
# define CYTHON_UNUSED
# endif
# elif defined(__ICC) || defined(__INTEL_COMPILER)
-# define CYTHON_UNUSED __attribute__ ((__unused__))
+# define CYTHON_UNUSED __attribute__ ((__unused__))
# else
-# define CYTHON_UNUSED
+# define CYTHON_UNUSED
# endif
#endif
#ifdef __GNUC__
/* Test for GCC > 2.95 */
-#if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))
+#if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))
#define likely(x) __builtin_expect(!!(x), 1)
#define unlikely(x) __builtin_expect(!!(x), 0)
#else /* __GNUC__ > 2 ... */
static const char *__pyx_f[] = {
"TabProxies.pyx",
"bool.pxd",
- "complex.pxd",
};
/* Type declarations */
-/* "TabProxies.pxd":42
+/* "pysam/TabProxies.pxd":42
* ctypedef int uint64_t
*
* cdef class TupleProxy: # <<<<<<<<<<<<<<
int is_modified;
};
-/* "TabProxies.pxd":78
+/* "pysam/TabProxies.pxd":77
* cdef update( self, char * buffer, size_t nbytes )
*
* cdef class NamedTupleProxy( TupleProxy) : # <<<<<<<<<<<<<<
struct __pyx_obj_10TabProxies_TupleProxy __pyx_base;
};
-/* "TabProxies.pxd":92
+/* "pysam/TabProxies.pxd":91
* cdef update( self, char * buffer, size_t nbytes )
*
* cdef class VCFProxy( NamedTupleProxy) : # <<<<<<<<<<<<<<
uint32_t pos;
};
-/* "TabProxies.pxd":61
+/* "pysam/TabProxies.pxd":60
* cdef update( self, char * buffer, size_t nbytes )
*
* cdef class GTFProxy( TupleProxy) : # <<<<<<<<<<<<<<
int hasOwnAttributes;
};
-/* "TabProxies.pxd":81
+/* "pysam/TabProxies.pxd":80
* pass
*
* cdef class BedProxy( NamedTupleProxy) : # <<<<<<<<<<<<<<
};
-/* "TabProxies.pyx":20
+/* "/ifs/devel/pysam/pysam/pysam/TabProxies.pyx":20
* return not (buffer <= p < buffer + nbytes )
*
* cdef class TupleProxy: # <<<<<<<<<<<<<<
static struct __pyx_vtabstruct_10TabProxies_TupleProxy *__pyx_vtabptr_10TabProxies_TupleProxy;
-/* "TabProxies.pyx":493
+/* "/ifs/devel/pysam/pysam/pysam/TabProxies.pyx":488
* self.fromDict( r )
*
* cdef class NamedTupleProxy( TupleProxy ): # <<<<<<<<<<<<<<
static struct __pyx_vtabstruct_10TabProxies_NamedTupleProxy *__pyx_vtabptr_10TabProxies_NamedTupleProxy;
-/* "TabProxies.pyx":578
+/* "/ifs/devel/pysam/pysam/pysam/TabProxies.pyx":573
* TupleProxy._setindex(self, idx, str(value) )
*
* cdef class VCFProxy( NamedTupleProxy ): # <<<<<<<<<<<<<<
static struct __pyx_vtabstruct_10TabProxies_VCFProxy *__pyx_vtabptr_10TabProxies_VCFProxy;
-/* "TabProxies.pyx":512
+/* "/ifs/devel/pysam/pysam/pysam/TabProxies.pyx":507
* return f( self.fields[idx] )
*
* cdef class BedProxy( NamedTupleProxy ): # <<<<<<<<<<<<<<
static struct __pyx_vtabstruct_10TabProxies_BedProxy *__pyx_vtabptr_10TabProxies_BedProxy;
-/* "TabProxies.pyx":240
+/* "/ifs/devel/pysam/pysam/pysam/TabProxies.pyx":231
* return str(v)
*
* cdef class GTFProxy( TupleProxy ): # <<<<<<<<<<<<<<
static PyObject *__Pyx_GetName(PyObject *dict, PyObject *name); /*proto*/
-static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
-static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
-
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
-
static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); /*proto*/
static CYTHON_INLINE int __Pyx_CheckKeywordStrings(PyObject *kwdict,
const char* function_name, int kw_allowed); /*proto*/
-static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
-
-static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
-
-static PyObject *__Pyx_UnpackItem(PyObject *, Py_ssize_t index); /*proto*/
-static int __Pyx_EndUnpack(PyObject *, Py_ssize_t expected); /*proto*/
-
static void __Pyx_RaiseDoubleKeywordsError(
const char* func_name, PyObject* kw_name); /*proto*/
((likely(PyFloat_CheckExact(obj))) ? \
PyFloat_AS_DOUBLE(obj) : __Pyx__PyObject_AsDouble(obj))
+static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
+
+static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
+
+static PyObject *__Pyx_UnpackItem(PyObject *, Py_ssize_t index); /*proto*/
+static int __Pyx_EndUnpack(PyObject *, Py_ssize_t expected); /*proto*/
+
static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list); /*proto*/
+static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
+static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
+
+static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
+
static CYTHON_INLINE PyObject *__Pyx_PyInt_to_py_uint32_t(uint32_t);
static CYTHON_INLINE uint32_t __Pyx_PyInt_from_py_uint32_t(PyObject *);
/* Module declarations from cpython.float */
-/* Module declarations from __builtin__ */
-
/* Module declarations from cpython.complex */
-static PyTypeObject *__pyx_ptype_7cpython_7complex_complex = 0;
/* Module declarations from cpython.string */
/* Module declarations from cpython.unicode */
static char *__pyx_f_10TabProxies_StrOrEmpty(char *); /*proto*/
static int __pyx_f_10TabProxies_isNew(char *, char *, size_t); /*proto*/
#define __Pyx_MODULE_NAME "TabProxies"
-static int __pyx_module_is_main_TabProxies = 0;
+int __pyx_module_is_main_TabProxies = 0;
/* Implementation of TabProxies */
static PyObject *__pyx_builtin_ValueError;
static PyObject *__pyx_builtin_IndexError;
-static PyObject *__pyx_builtin_range;
static PyObject *__pyx_builtin_StopIteration;
static PyObject *__pyx_builtin_xrange;
static PyObject *__pyx_builtin_TypeError;
static char __pyx_k_1[] = "malformatted entry at %s";
static char __pyx_k_2[] = "";
static char __pyx_k_3[] = "out of memory";
-static char __pyx_k_5[] = "incomplete line at %s";
-static char __pyx_k_7[] = "row too large - more than %i fields";
-static char __pyx_k_8[] = "list index out of range";
-static char __pyx_k_10[] = "list index out of range %i >= %i";
-static char __pyx_k_14[] = "\t";
-static char __pyx_k_16[] = ".";
-static char __pyx_k_17[] = "\"%s\"";
-static char __pyx_k_18[] = ";";
-static char __pyx_k_20[] = " ";
-static char __pyx_k_22[] = "\"";
-static char __pyx_k_23[] = "%s \"%s\"";
-static char __pyx_k_24[] = "%s %s";
-static char __pyx_k_25[] = "; ";
-static char __pyx_k_29[] = "'GTFProxy' has no attribute '%s'";
-static char __pyx_k_30[] = "field %s not set";
-static char __pyx_k_31[] = "bed format requires at least three columns";
-static char __pyx_k_33[] = "contig of feature.";
-static char __pyx_k_34[] = "feature name.";
-static char __pyx_k_35[] = "feature source.";
-static char __pyx_k_36[] = "feature start (in 0-based open/closed coordinates).";
-static char __pyx_k_37[] = "feature end (in 0-based open/closed coordinates).";
-static char __pyx_k_38[] = "feature score.";
-static char __pyx_k_39[] = "feature strand.";
-static char __pyx_k_40[] = "feature frame.";
-static char __pyx_k_41[] = "feature attributes (as a string).";
+static char __pyx_k_4[] = "incomplete line at %s";
+static char __pyx_k_5[] = "row too large - more than %i fields";
+static char __pyx_k_6[] = "list index out of range";
+static char __pyx_k_7[] = "\t";
+static char __pyx_k_8[] = ".";
+static char __pyx_k_9[] = "\"%s\"";
+static char __pyx_k_10[] = ";";
+static char __pyx_k_11[] = " ";
+static char __pyx_k_12[] = "\"";
+static char __pyx_k_13[] = "%s \"%s\"";
+static char __pyx_k_14[] = "%s %s";
+static char __pyx_k_15[] = "; ";
+static char __pyx_k_16[] = "'GTFProxy' has no attribute '%s'";
+static char __pyx_k_17[] = "field %s not set";
+static char __pyx_k_18[] = "bed format requires at least three columns";
+static char __pyx_k_19[] = "contig of feature.";
+static char __pyx_k_20[] = "feature name.";
+static char __pyx_k_21[] = "feature source.";
+static char __pyx_k_22[] = "feature start (in 0-based open/closed coordinates).";
+static char __pyx_k_23[] = "feature end (in 0-based open/closed coordinates).";
+static char __pyx_k_24[] = "feature score.";
+static char __pyx_k_25[] = "feature strand.";
+static char __pyx_k_26[] = "feature frame.";
+static char __pyx_k_27[] = "feature attributes (as a string).";
+static char __pyx_k_28[] = "TupleProxy._setindex (line 154)";
+static char __pyx_k_29[] = "TupleProxy.__setitem__ (line 177)";
+static char __pyx_k_30[] = "TupleProxy.__next__ (line 192)";
+static char __pyx_k_31[] = "TupleProxy.__str__ (line 202)";
+static char __pyx_k_32[] = "toDot (line 219)";
+static char __pyx_k_33[] = "quote (line 224)";
+static char __pyx_k_34[] = "GTFProxy.asDict (line 350)";
+static char __pyx_k_35[] = "GTFProxy.fromDict (line 385)";
+static char __pyx_k_36[] = "GTFProxy.invert (line 430)";
+static char __pyx_k_37[] = "GTFProxy.keys (line 441)";
+static char __pyx_k_38[] = "GTFProxy.__getattr__ (line 449)";
+static char __pyx_k_39[] = "GTFProxy.setAttribute (line 482)";
+static char __pyx_k_40[] = "NamedTupleProxy.__setattr__ (line 492)";
+static char __pyx_k_41[] = "BedProxy.__setattr__ (line 564)";
+static char __pyx_k_42[] = "VCFProxy.__setattr__ (line 608)";
static char __pyx_k__id[] = "id";
static char __pyx_k__alt[] = "alt";
static char __pyx_k__end[] = "end";
static char __pyx_k__data[] = "data";
static char __pyx_k__info[] = "info";
static char __pyx_k__join[] = "join";
+static char __pyx_k__keys[] = "keys";
static char __pyx_k__name[] = "name";
static char __pyx_k__qual[] = "qual";
static char __pyx_k__frame[] = "frame";
static char __pyx_k__toDot[] = "toDot";
static char __pyx_k__types[] = "types";
static char __pyx_k__value[] = "value";
-static char __pyx_k__append[] = "append";
static char __pyx_k__asDict[] = "asDict";
static char __pyx_k__contig[] = "contig";
static char __pyx_k__fields[] = "fields";
static char __pyx_k__filter[] = "filter";
static char __pyx_k__format[] = "format";
+static char __pyx_k__invert[] = "invert";
static char __pyx_k__nbytes[] = "nbytes";
static char __pyx_k__offset[] = "offset";
static char __pyx_k__source[] = "source";
static char __pyx_k__xrange[] = "xrange";
static char __pyx_k____str__[] = "__str__";
static char __pyx_k__feature[] = "feature";
-static char __pyx_k__indices[] = "indices";
static char __pyx_k__itemRGB[] = "itemRGB";
static char __pyx_k__nfields[] = "nfields";
+static char __pyx_k__BedProxy[] = "BedProxy";
+static char __pyx_k__GTFProxy[] = "GTFProxy";
static char __pyx_k__KeyError[] = "KeyError";
+static char __pyx_k__VCFProxy[] = "VCFProxy";
static char __pyx_k____main__[] = "__main__";
+static char __pyx_k____next__[] = "__next__";
static char __pyx_k____test__[] = "__test__";
static char __pyx_k__fromDict[] = "fromDict";
static char __pyx_k__thickEnd[] = "thickEnd";
static char __pyx_k__TypeError[] = "TypeError";
-static char __pyx_k___getindex[] = "_getindex";
static char __pyx_k___setindex[] = "_setindex";
static char __pyx_k__bedfields[] = "bedfields";
static char __pyx_k__IndexError[] = "IndexError";
static char __pyx_k__StringType[] = "StringType";
-static char __pyx_k__TabProxies[] = "TabProxies";
+static char __pyx_k__TupleProxy[] = "TupleProxy";
static char __pyx_k__ValueError[] = "ValueError";
static char __pyx_k__attributes[] = "attributes";
static char __pyx_k__blockCount[] = "blockCount";
static char __pyx_k__thickStart[] = "thickStart";
static char __pyx_k__StringTypes[] = "StringTypes";
static char __pyx_k____getattr__[] = "__getattr__";
+static char __pyx_k____setattr__[] = "__setattr__";
static char __pyx_k____setitem__[] = "__setitem__";
static char __pyx_k__blockStarts[] = "blockStarts";
static char __pyx_k__is_modified[] = "is_modified";
static char __pyx_k__getMaxFields[] = "getMaxFields";
+static char __pyx_k__setAttribute[] = "setAttribute";
static char __pyx_k__StopIteration[] = "StopIteration";
static char __pyx_k__map_key2field[] = "map_key2field";
static char __pyx_k__AttributeError[] = "AttributeError";
+static char __pyx_k__NamedTupleProxy[] = "NamedTupleProxy";
static char __pyx_k__hasOwnAttributes[] = "hasOwnAttributes";
static PyObject *__pyx_kp_s_1;
static PyObject *__pyx_kp_s_10;
+static PyObject *__pyx_kp_s_11;
+static PyObject *__pyx_kp_s_12;
+static PyObject *__pyx_kp_s_13;
static PyObject *__pyx_kp_s_14;
+static PyObject *__pyx_kp_s_15;
static PyObject *__pyx_kp_s_16;
static PyObject *__pyx_kp_s_17;
static PyObject *__pyx_kp_s_18;
static PyObject *__pyx_kp_s_2;
-static PyObject *__pyx_kp_s_20;
-static PyObject *__pyx_kp_s_22;
-static PyObject *__pyx_kp_s_23;
-static PyObject *__pyx_kp_s_24;
-static PyObject *__pyx_kp_s_25;
-static PyObject *__pyx_kp_s_29;
+static PyObject *__pyx_kp_u_28;
+static PyObject *__pyx_kp_u_29;
static PyObject *__pyx_kp_s_3;
-static PyObject *__pyx_kp_s_30;
-static PyObject *__pyx_kp_s_31;
+static PyObject *__pyx_kp_u_30;
+static PyObject *__pyx_kp_u_31;
+static PyObject *__pyx_kp_u_32;
+static PyObject *__pyx_kp_u_33;
+static PyObject *__pyx_kp_u_34;
+static PyObject *__pyx_kp_u_35;
+static PyObject *__pyx_kp_u_36;
+static PyObject *__pyx_kp_u_37;
+static PyObject *__pyx_kp_u_38;
+static PyObject *__pyx_kp_u_39;
+static PyObject *__pyx_kp_s_4;
+static PyObject *__pyx_kp_u_40;
+static PyObject *__pyx_kp_u_41;
+static PyObject *__pyx_kp_u_42;
static PyObject *__pyx_kp_s_5;
+static PyObject *__pyx_kp_s_6;
static PyObject *__pyx_kp_s_7;
static PyObject *__pyx_kp_s_8;
+static PyObject *__pyx_kp_s_9;
static PyObject *__pyx_n_s__AttributeError;
+static PyObject *__pyx_n_s__BedProxy;
+static PyObject *__pyx_n_s__GTFProxy;
static PyObject *__pyx_n_s__IndexError;
static PyObject *__pyx_n_s__KeyError;
+static PyObject *__pyx_n_s__NamedTupleProxy;
static PyObject *__pyx_n_s__StopIteration;
static PyObject *__pyx_n_s__StringType;
static PyObject *__pyx_n_s__StringTypes;
-static PyObject *__pyx_n_s__TabProxies;
+static PyObject *__pyx_n_s__TupleProxy;
static PyObject *__pyx_n_s__TypeError;
+static PyObject *__pyx_n_s__VCFProxy;
static PyObject *__pyx_n_s__ValueError;
static PyObject *__pyx_n_s____getattr__;
static PyObject *__pyx_n_s____main__;
+static PyObject *__pyx_n_s____next__;
+static PyObject *__pyx_n_s____setattr__;
static PyObject *__pyx_n_s____setitem__;
static PyObject *__pyx_n_s____str__;
static PyObject *__pyx_n_s____test__;
-static PyObject *__pyx_n_s___getindex;
static PyObject *__pyx_n_s___setindex;
static PyObject *__pyx_n_s__alt;
-static PyObject *__pyx_n_s__append;
static PyObject *__pyx_n_s__asDict;
static PyObject *__pyx_n_s__attributes;
static PyObject *__pyx_n_s__bedfields;
static PyObject *__pyx_n_s__hasOwnAttributes;
static PyObject *__pyx_n_s__id;
static PyObject *__pyx_n_s__index;
-static PyObject *__pyx_n_s__indices;
static PyObject *__pyx_n_s__info;
+static PyObject *__pyx_n_s__invert;
static PyObject *__pyx_n_s__is_modified;
static PyObject *__pyx_n_s__itemRGB;
static PyObject *__pyx_n_s__items;
static PyObject *__pyx_n_s__join;
+static PyObject *__pyx_n_s__keys;
static PyObject *__pyx_n_s__map_key2field;
static PyObject *__pyx_n_s__name;
static PyObject *__pyx_n_s__nbytes;
static PyObject *__pyx_n_s__range;
static PyObject *__pyx_n_s__ref;
static PyObject *__pyx_n_s__score;
+static PyObject *__pyx_n_s__setAttribute;
static PyObject *__pyx_n_s__source;
static PyObject *__pyx_n_s__split;
static PyObject *__pyx_n_s__start;
static PyObject *__pyx_int_9;
static PyObject *__pyx_int_10;
static PyObject *__pyx_int_11;
-static PyObject *__pyx_k_tuple_4;
-static PyObject *__pyx_k_tuple_6;
-static PyObject *__pyx_k_tuple_9;
-static PyObject *__pyx_k_tuple_11;
-static PyObject *__pyx_k_tuple_12;
-static PyObject *__pyx_k_tuple_13;
-static PyObject *__pyx_k_tuple_15;
-static PyObject *__pyx_k_tuple_19;
-static PyObject *__pyx_k_tuple_21;
-static PyObject *__pyx_k_tuple_26;
-static PyObject *__pyx_k_tuple_27;
-static PyObject *__pyx_k_tuple_28;
-static PyObject *__pyx_k_tuple_32;
-
-/* "TabProxies.pyx":4
+
+/* "/ifs/devel/pysam/pysam/pysam/TabProxies.pyx":4
* from cpython cimport PyString_FromStringAndSize, PyString_AsString, PyString_AS_STRING
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-static PyTypeObject __pyx_type_10TabProxies_TupleProxy = {
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PyVarObject_HEAD_INIT(0, 0)
__Pyx_NAMESTR("TabProxies.TupleProxy"), /*tp_name*/
sizeof(struct __pyx_obj_10TabProxies_TupleProxy), /*tp_basicsize*/
&__pyx_tp_as_mapping_TupleProxy, /*tp_as_mapping*/
0, /*tp_hash*/
0, /*tp_call*/
- __pyx_pf_10TabProxies_10TupleProxy_9__str__, /*tp_str*/
+ __pyx_pf_10TabProxies_10TupleProxy___str__, /*tp_str*/
0, /*tp_getattro*/
0, /*tp_setattro*/
&__pyx_tp_as_buffer_TupleProxy, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
+ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/
__Pyx_DOCSTR("Proxy class for access to parsed row as a tuple.\n\n This class represents a table row for fast read-access.\n\n Access to individual fields is via the [] operator.\n \n Only read-only access is implemented.\n "), /*tp_doc*/
0, /*tp_traverse*/
0, /*tp_clear*/
0, /*tp_richcompare*/
0, /*tp_weaklistoffset*/
- __pyx_pf_10TabProxies_10TupleProxy_7__iter__, /*tp_iter*/
- __pyx_pf_10TabProxies_10TupleProxy_8__next__, /*tp_iternext*/
+ __pyx_pf_10TabProxies_10TupleProxy___iter__, /*tp_iter*/
+ __pyx_pf_10TabProxies_10TupleProxy___next__, /*tp_iternext*/
__pyx_methods_10TabProxies_TupleProxy, /*tp_methods*/
0, /*tp_members*/
0, /*tp_getset*/
PyObject *etype, *eval, *etb;
PyErr_Fetch(&etype, &eval, &etb);
++Py_REFCNT(o);
- __pyx_pf_10TabProxies_8GTFProxy_1__dealloc__(o);
+ __pyx_pf_10TabProxies_8GTFProxy___dealloc__(o);
if (PyErr_Occurred()) PyErr_WriteUnraisable(o);
--Py_REFCNT(o);
PyErr_Restore(etype, eval, etb);
PyObject *v = PyObject_GenericGetAttr(o, n);
if (!v && PyErr_ExceptionMatches(PyExc_AttributeError)) {
PyErr_Clear();
- v = __pyx_pf_10TabProxies_8GTFProxy_8__getattr__(o, n);
+ v = __pyx_pf_10TabProxies_8GTFProxy___getattr__(o, n);
}
return v;
}
static int __pyx_setprop_10TabProxies_8GTFProxy_contig(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_6contig_1__set__(o, v);
+ return __pyx_pf_10TabProxies_8GTFProxy_6contig___set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
static int __pyx_setprop_10TabProxies_8GTFProxy_feature(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_7feature_1__set__(o, v);
+ return __pyx_pf_10TabProxies_8GTFProxy_7feature___set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
static int __pyx_setprop_10TabProxies_8GTFProxy_source(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_6source_1__set__(o, v);
+ return __pyx_pf_10TabProxies_8GTFProxy_6source___set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
static int __pyx_setprop_10TabProxies_8GTFProxy_start(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_5start_1__set__(o, v);
+ return __pyx_pf_10TabProxies_8GTFProxy_5start___set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
static int __pyx_setprop_10TabProxies_8GTFProxy_end(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_3end_1__set__(o, v);
+ return __pyx_pf_10TabProxies_8GTFProxy_3end___set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
static int __pyx_setprop_10TabProxies_8GTFProxy_score(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_5score_1__set__(o, v);
+ return __pyx_pf_10TabProxies_8GTFProxy_5score___set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
static int __pyx_setprop_10TabProxies_8GTFProxy_strand(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_6strand_1__set__(o, v);
+ return __pyx_pf_10TabProxies_8GTFProxy_6strand___set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
static int __pyx_setprop_10TabProxies_8GTFProxy_frame(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_5frame_1__set__(o, v);
+ return __pyx_pf_10TabProxies_8GTFProxy_5frame___set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
static int __pyx_setprop_10TabProxies_8GTFProxy_attributes(PyObject *o, PyObject *v, void *x) {
if (v) {
- return __pyx_pf_10TabProxies_8GTFProxy_10attributes_1__set__(o, v);
+ return __pyx_pf_10TabProxies_8GTFProxy_10attributes___set__(o, v);
}
else {
PyErr_SetString(PyExc_NotImplementedError, "__del__");
}
static PyMethodDef __pyx_methods_10TabProxies_GTFProxy[] = {
- {__Pyx_NAMESTR("asDict"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_2asDict, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_2asDict)},
- {__Pyx_NAMESTR("fromDict"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_3fromDict, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_3fromDict)},
- {__Pyx_NAMESTR("invert"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_5invert, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_5invert)},
- {__Pyx_NAMESTR("keys"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_6keys, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_6keys)},
- {__Pyx_NAMESTR("__getattr__"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_8__getattr__, METH_O|METH_COEXIST, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_8__getattr__)},
- {__Pyx_NAMESTR("setAttribute"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_9setAttribute, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_9setAttribute)},
+ {__Pyx_NAMESTR("asDict"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_asDict, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_asDict)},
+ {__Pyx_NAMESTR("fromDict"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_fromDict, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_fromDict)},
+ {__Pyx_NAMESTR("invert"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_invert, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_invert)},
+ {__Pyx_NAMESTR("keys"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_keys, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_keys)},
+ {__Pyx_NAMESTR("__getattr__"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy___getattr__, METH_O|METH_COEXIST, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy___getattr__)},
+ {__Pyx_NAMESTR("setAttribute"), (PyCFunction)__pyx_pf_10TabProxies_8GTFProxy_setAttribute, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_10TabProxies_8GTFProxy_setAttribute)},
{0, 0, 0, 0}
};
static struct PyGetSetDef __pyx_getsets_10TabProxies_GTFProxy[] = {
- {(char *)"contig", __pyx_getprop_10TabProxies_8GTFProxy_contig, __pyx_setprop_10TabProxies_8GTFProxy_contig, __Pyx_DOCSTR(__pyx_k_33), 0},
- {(char *)"feature", __pyx_getprop_10TabProxies_8GTFProxy_feature, __pyx_setprop_10TabProxies_8GTFProxy_feature, __Pyx_DOCSTR(__pyx_k_34), 0},
- {(char *)"source", __pyx_getprop_10TabProxies_8GTFProxy_source, __pyx_setprop_10TabProxies_8GTFProxy_source, __Pyx_DOCSTR(__pyx_k_35), 0},
- {(char *)"start", __pyx_getprop_10TabProxies_8GTFProxy_start, __pyx_setprop_10TabProxies_8GTFProxy_start, __Pyx_DOCSTR(__pyx_k_36), 0},
- {(char *)"end", __pyx_getprop_10TabProxies_8GTFProxy_end, __pyx_setprop_10TabProxies_8GTFProxy_end, __Pyx_DOCSTR(__pyx_k_37), 0},
- {(char *)"score", __pyx_getprop_10TabProxies_8GTFProxy_score, __pyx_setprop_10TabProxies_8GTFProxy_score, __Pyx_DOCSTR(__pyx_k_38), 0},
- {(char *)"strand", __pyx_getprop_10TabProxies_8GTFProxy_strand, __pyx_setprop_10TabProxies_8GTFProxy_strand, __Pyx_DOCSTR(__pyx_k_39), 0},
- {(char *)"frame", __pyx_getprop_10TabProxies_8GTFProxy_frame, __pyx_setprop_10TabProxies_8GTFProxy_frame, __Pyx_DOCSTR(__pyx_k_40), 0},
- {(char *)"attributes", __pyx_getprop_10TabProxies_8GTFProxy_attributes, __pyx_setprop_10TabProxies_8GTFProxy_attributes, __Pyx_DOCSTR(__pyx_k_41), 0},
+ {(char *)"contig", __pyx_getprop_10TabProxies_8GTFProxy_contig, __pyx_setprop_10TabProxies_8GTFProxy_contig, __Pyx_DOCSTR(__pyx_k_19), 0},
+ {(char *)"feature", __pyx_getprop_10TabProxies_8GTFProxy_feature, __pyx_setprop_10TabProxies_8GTFProxy_feature, __Pyx_DOCSTR(__pyx_k_20), 0},
+ {(char *)"source", __pyx_getprop_10TabProxies_8GTFProxy_source, __pyx_setprop_10TabProxies_8GTFProxy_source, __Pyx_DOCSTR(__pyx_k_21), 0},
+ {(char *)"start", __pyx_getprop_10TabProxies_8GTFProxy_start, __pyx_setprop_10TabProxies_8GTFProxy_start, __Pyx_DOCSTR(__pyx_k_22), 0},
+ {(char *)"end", __pyx_getprop_10TabProxies_8GTFProxy_end, __pyx_setprop_10TabProxies_8GTFProxy_end, __Pyx_DOCSTR(__pyx_k_23), 0},
+ {(char *)"score", __pyx_getprop_10TabProxies_8GTFProxy_score, __pyx_setprop_10TabProxies_8GTFProxy_score, __Pyx_DOCSTR(__pyx_k_24), 0},
+ {(char *)"strand", __pyx_getprop_10TabProxies_8GTFProxy_strand, __pyx_setprop_10TabProxies_8GTFProxy_strand, __Pyx_DOCSTR(__pyx_k_25), 0},
+ {(char *)"frame", __pyx_getprop_10TabProxies_8GTFProxy_frame, __pyx_setprop_10TabProxies_8GTFProxy_frame, __Pyx_DOCSTR(__pyx_k_26), 0},
+ {(char *)"attributes", __pyx_getprop_10TabProxies_8GTFProxy_attributes, __pyx_setprop_10TabProxies_8GTFProxy_attributes, __Pyx_DOCSTR(__pyx_k_27), 0},
{0, 0, 0, 0, 0}
};
static PyMappingMethods __pyx_tp_as_mapping_GTFProxy = {
0, /*mp_length*/
- __pyx_pf_10TabProxies_8GTFProxy_7__getitem__, /*mp_subscript*/
+ __pyx_pf_10TabProxies_8GTFProxy___getitem__, /*mp_subscript*/
0, /*mp_ass_subscript*/
};
#endif
};
-static PyTypeObject __pyx_type_10TabProxies_GTFProxy = {
+PyTypeObject __pyx_type_10TabProxies_GTFProxy = {
PyVarObject_HEAD_INIT(0, 0)
__Pyx_NAMESTR("TabProxies.GTFProxy"), /*tp_name*/
sizeof(struct __pyx_obj_10TabProxies_GTFProxy), /*tp_basicsize*/
&__pyx_tp_as_mapping_GTFProxy, /*tp_as_mapping*/
0, /*tp_hash*/
0, /*tp_call*/
- __pyx_pf_10TabProxies_8GTFProxy_4__str__, /*tp_str*/
+ __pyx_pf_10TabProxies_8GTFProxy___str__, /*tp_str*/
__pyx_tp_getattro_10TabProxies_GTFProxy, /*tp_getattro*/
0, /*tp_setattro*/
&__pyx_tp_as_buffer_GTFProxy, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
+ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/
__Pyx_DOCSTR("Proxy class for access to GTF fields.\n\n This class represents a GTF entry for fast read-access.\n Write-access has been added as well, though some care must\n be taken. If any of the string fields (contig, source, ...)\n are set, the new value is tied to the lifetime of the\n argument that was supplied.\n\n The only exception is the attributes field when set from\n a dictionary - this field will manage its own memory.\n\n "), /*tp_doc*/
0, /*tp_traverse*/
0, /*tp_clear*/
PyObject *v = PyObject_GenericGetAttr(o, n);
if (!v && PyErr_ExceptionMatches(PyExc_AttributeError)) {
PyErr_Clear();
- v = __pyx_pf_10TabProxies_15NamedTupleProxy_1__getattr__(o, n);
+ v = __pyx_pf_10TabProxies_15NamedTupleProxy___getattr__(o, n);
}
return v;
}
}
static PyMethodDef __pyx_methods_10TabProxies_NamedTupleProxy[] = {
- {__Pyx_NAMESTR("__getattr__"), (PyCFunction)__pyx_pf_10TabProxies_15NamedTupleProxy_1__getattr__, METH_O|METH_COEXIST, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("__getattr__"), (PyCFunction)__pyx_pf_10TabProxies_15NamedTupleProxy___getattr__, METH_O|METH_COEXIST, __Pyx_DOCSTR(0)},
{0, 0, 0, 0}
};
#endif
};
-static PyTypeObject __pyx_type_10TabProxies_NamedTupleProxy = {
+PyTypeObject __pyx_type_10TabProxies_NamedTupleProxy = {
PyVarObject_HEAD_INIT(0, 0)
__Pyx_NAMESTR("TabProxies.NamedTupleProxy"), /*tp_name*/
sizeof(struct __pyx_obj_10TabProxies_NamedTupleProxy), /*tp_basicsize*/
__pyx_tp_getattro_10TabProxies_NamedTupleProxy, /*tp_getattro*/
__pyx_tp_setattro_10TabProxies_NamedTupleProxy, /*tp_setattro*/
&__pyx_tp_as_buffer_NamedTupleProxy, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
+ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/
0, /*tp_doc*/
0, /*tp_traverse*/
0, /*tp_clear*/
static int __pyx_tp_setattro_10TabProxies_BedProxy(PyObject *o, PyObject *n, PyObject *v) {
if (v) {
- return __pyx_pf_10TabProxies_8BedProxy_1__setattr__(o, n, v);
+ return __pyx_pf_10TabProxies_8BedProxy___setattr__(o, n, v);
}
else {
if (__pyx_ptype_10TabProxies_NamedTupleProxy->tp_setattro)
#endif
};
-static PyTypeObject __pyx_type_10TabProxies_BedProxy = {
+PyTypeObject __pyx_type_10TabProxies_BedProxy = {
PyVarObject_HEAD_INIT(0, 0)
__Pyx_NAMESTR("TabProxies.BedProxy"), /*tp_name*/
sizeof(struct __pyx_obj_10TabProxies_BedProxy), /*tp_basicsize*/
0, /*tp_getattro*/
__pyx_tp_setattro_10TabProxies_BedProxy, /*tp_setattro*/
&__pyx_tp_as_buffer_BedProxy, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
+ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/
__Pyx_DOCSTR("Proxy class for access to Bed fields.\n\n This class represents a GTF entry for fast read-access.\n "), /*tp_doc*/
0, /*tp_traverse*/
0, /*tp_clear*/
static int __pyx_tp_setattro_10TabProxies_VCFProxy(PyObject *o, PyObject *n, PyObject *v) {
if (v) {
- return __pyx_pf_10TabProxies_8VCFProxy_2__setattr__(o, n, v);
+ return __pyx_pf_10TabProxies_8VCFProxy___setattr__(o, n, v);
}
else {
if (__pyx_ptype_10TabProxies_NamedTupleProxy->tp_setattro)
}
}
-static PyObject *__pyx_getprop_10TabProxies_8VCFProxy_pos(PyObject *o, void *x) {
- return __pyx_pf_10TabProxies_8VCFProxy_3pos___get__(o);
-}
-
static PyMethodDef __pyx_methods_10TabProxies_VCFProxy[] = {
{0, 0, 0, 0}
};
-static struct PyGetSetDef __pyx_getsets_10TabProxies_VCFProxy[] = {
- {(char *)"pos", __pyx_getprop_10TabProxies_8VCFProxy_pos, 0, __Pyx_DOCSTR(__pyx_k_37), 0},
- {0, 0, 0, 0, 0}
-};
-
static PyNumberMethods __pyx_tp_as_number_VCFProxy = {
0, /*nb_add*/
0, /*nb_subtract*/
};
static PySequenceMethods __pyx_tp_as_sequence_VCFProxy = {
- __pyx_pf_10TabProxies_8VCFProxy_1__len__, /*sq_length*/
+ __pyx_pf_10TabProxies_8VCFProxy___len__, /*sq_length*/
0, /*sq_concat*/
0, /*sq_repeat*/
0, /*sq_item*/
};
static PyMappingMethods __pyx_tp_as_mapping_VCFProxy = {
- __pyx_pf_10TabProxies_8VCFProxy_1__len__, /*mp_length*/
+ __pyx_pf_10TabProxies_8VCFProxy___len__, /*mp_length*/
0, /*mp_subscript*/
0, /*mp_ass_subscript*/
};
#endif
};
-static PyTypeObject __pyx_type_10TabProxies_VCFProxy = {
+PyTypeObject __pyx_type_10TabProxies_VCFProxy = {
PyVarObject_HEAD_INIT(0, 0)
__Pyx_NAMESTR("TabProxies.VCFProxy"), /*tp_name*/
sizeof(struct __pyx_obj_10TabProxies_VCFProxy), /*tp_basicsize*/
0, /*tp_getattro*/
__pyx_tp_setattro_10TabProxies_VCFProxy, /*tp_setattro*/
&__pyx_tp_as_buffer_VCFProxy, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
+ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/
__Pyx_DOCSTR("Proxy class for access to VCF fields.\n\n The genotypes are accessed via index.\n "), /*tp_doc*/
0, /*tp_traverse*/
0, /*tp_clear*/
0, /*tp_iternext*/
__pyx_methods_10TabProxies_VCFProxy, /*tp_methods*/
0, /*tp_members*/
- __pyx_getsets_10TabProxies_VCFProxy, /*tp_getset*/
+ 0, /*tp_getset*/
0, /*tp_base*/
0, /*tp_dict*/
0, /*tp_descr_get*/
};
static PyMethodDef __pyx_methods[] = {
+ {__Pyx_NAMESTR("toDot"), (PyCFunction)__pyx_pf_10TabProxies_toDot, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_toDot)},
+ {__Pyx_NAMESTR("quote"), (PyCFunction)__pyx_pf_10TabProxies_quote, METH_O, __Pyx_DOCSTR(__pyx_doc_10TabProxies_quote)},
{0, 0, 0, 0}
};
static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_kp_s_1, __pyx_k_1, sizeof(__pyx_k_1), 0, 0, 1, 0},
{&__pyx_kp_s_10, __pyx_k_10, sizeof(__pyx_k_10), 0, 0, 1, 0},
+ {&__pyx_kp_s_11, __pyx_k_11, sizeof(__pyx_k_11), 0, 0, 1, 0},
+ {&__pyx_kp_s_12, __pyx_k_12, sizeof(__pyx_k_12), 0, 0, 1, 0},
+ {&__pyx_kp_s_13, __pyx_k_13, sizeof(__pyx_k_13), 0, 0, 1, 0},
{&__pyx_kp_s_14, __pyx_k_14, sizeof(__pyx_k_14), 0, 0, 1, 0},
+ {&__pyx_kp_s_15, __pyx_k_15, sizeof(__pyx_k_15), 0, 0, 1, 0},
{&__pyx_kp_s_16, __pyx_k_16, sizeof(__pyx_k_16), 0, 0, 1, 0},
{&__pyx_kp_s_17, __pyx_k_17, sizeof(__pyx_k_17), 0, 0, 1, 0},
{&__pyx_kp_s_18, __pyx_k_18, sizeof(__pyx_k_18), 0, 0, 1, 0},
{&__pyx_kp_s_2, __pyx_k_2, sizeof(__pyx_k_2), 0, 0, 1, 0},
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- {&__pyx_kp_s_23, __pyx_k_23, sizeof(__pyx_k_23), 0, 0, 1, 0},
- {&__pyx_kp_s_24, __pyx_k_24, sizeof(__pyx_k_24), 0, 0, 1, 0},
- {&__pyx_kp_s_25, __pyx_k_25, sizeof(__pyx_k_25), 0, 0, 1, 0},
- {&__pyx_kp_s_29, __pyx_k_29, sizeof(__pyx_k_29), 0, 0, 1, 0},
+ {&__pyx_kp_u_28, __pyx_k_28, sizeof(__pyx_k_28), 0, 1, 0, 0},
+ {&__pyx_kp_u_29, __pyx_k_29, sizeof(__pyx_k_29), 0, 1, 0, 0},
{&__pyx_kp_s_3, __pyx_k_3, sizeof(__pyx_k_3), 0, 0, 1, 0},
- {&__pyx_kp_s_30, __pyx_k_30, sizeof(__pyx_k_30), 0, 0, 1, 0},
- {&__pyx_kp_s_31, __pyx_k_31, sizeof(__pyx_k_31), 0, 0, 1, 0},
+ {&__pyx_kp_u_30, __pyx_k_30, sizeof(__pyx_k_30), 0, 1, 0, 0},
+ {&__pyx_kp_u_31, __pyx_k_31, sizeof(__pyx_k_31), 0, 1, 0, 0},
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- __pyx_L1_error:;
- __Pyx_RefNannyFinishContext();
- return -1;
-}
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-static int __Pyx_InitGlobals(void) {
- if (__Pyx_InitStrings(__pyx_string_tab) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_0 = PyInt_FromLong(0); if (unlikely(!__pyx_int_0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_1 = PyInt_FromLong(1); if (unlikely(!__pyx_int_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_2 = PyInt_FromLong(2); if (unlikely(!__pyx_int_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_3 = PyInt_FromLong(3); if (unlikely(!__pyx_int_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_4 = PyInt_FromLong(4); if (unlikely(!__pyx_int_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_5 = PyInt_FromLong(5); if (unlikely(!__pyx_int_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_6 = PyInt_FromLong(6); if (unlikely(!__pyx_int_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_7 = PyInt_FromLong(7); if (unlikely(!__pyx_int_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_8 = PyInt_FromLong(8); if (unlikely(!__pyx_int_8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_9 = PyInt_FromLong(9); if (unlikely(!__pyx_int_9)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_10 = PyInt_FromLong(10); if (unlikely(!__pyx_int_10)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- __pyx_int_11 = PyInt_FromLong(11); if (unlikely(!__pyx_int_11)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
- return 0;
- __pyx_L1_error:;
- return -1;
-}
+static int __Pyx_InitGlobals(void) {
+ if (__Pyx_InitStrings(__pyx_string_tab) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_0 = PyInt_FromLong(0); if (unlikely(!__pyx_int_0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_1 = PyInt_FromLong(1); if (unlikely(!__pyx_int_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_2 = PyInt_FromLong(2); if (unlikely(!__pyx_int_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_3 = PyInt_FromLong(3); if (unlikely(!__pyx_int_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_4 = PyInt_FromLong(4); if (unlikely(!__pyx_int_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_5 = PyInt_FromLong(5); if (unlikely(!__pyx_int_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_6 = PyInt_FromLong(6); if (unlikely(!__pyx_int_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_7 = PyInt_FromLong(7); if (unlikely(!__pyx_int_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_8 = PyInt_FromLong(8); if (unlikely(!__pyx_int_8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_9 = PyInt_FromLong(9); if (unlikely(!__pyx_int_9)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_10 = PyInt_FromLong(10); if (unlikely(!__pyx_int_10)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ __pyx_int_11 = PyInt_FromLong(11); if (unlikely(!__pyx_int_11)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
+ return 0;
+ __pyx_L1_error:;
+ return -1;
+}
#if PY_MAJOR_VERSION < 3
PyMODINIT_FUNC initTabProxies(void); /*proto*/
{
PyObject *__pyx_t_1 = NULL;
PyObject *__pyx_t_2 = NULL;
+ PyObject *__pyx_t_3 = NULL;
#if CYTHON_REFNANNY
void* __pyx_refnanny = NULL;
__Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny");
}
/*--- Builtin init code ---*/
if (unlikely(__Pyx_InitCachedBuiltins() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- /*--- Constants init code ---*/
- if (unlikely(__Pyx_InitCachedConstants() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
/*--- Global init code ---*/
/*--- Function export code ---*/
/*--- Type init code ---*/
__pyx_vtabptr_10TabProxies_TupleProxy = &__pyx_vtable_10TabProxies_TupleProxy;
+ #if PY_MAJOR_VERSION >= 3
__pyx_vtable_10TabProxies_TupleProxy.getMaxFields = (int (*)(struct __pyx_obj_10TabProxies_TupleProxy *, size_t))__pyx_f_10TabProxies_10TupleProxy_getMaxFields;
__pyx_vtable_10TabProxies_TupleProxy.take = (PyObject *(*)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t))__pyx_f_10TabProxies_10TupleProxy_take;
__pyx_vtable_10TabProxies_TupleProxy.present = (PyObject *(*)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t))__pyx_f_10TabProxies_10TupleProxy_present;
__pyx_vtable_10TabProxies_TupleProxy.copy = (PyObject *(*)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t))__pyx_f_10TabProxies_10TupleProxy_copy;
__pyx_vtable_10TabProxies_TupleProxy.update = (PyObject *(*)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t))__pyx_f_10TabProxies_10TupleProxy_update;
+ #else
+ *(void(**)(void))&__pyx_vtable_10TabProxies_TupleProxy.getMaxFields = (void(*)(void))__pyx_f_10TabProxies_10TupleProxy_getMaxFields;
+ *(void(**)(void))&__pyx_vtable_10TabProxies_TupleProxy.take = (void(*)(void))__pyx_f_10TabProxies_10TupleProxy_take;
+ *(void(**)(void))&__pyx_vtable_10TabProxies_TupleProxy.present = (void(*)(void))__pyx_f_10TabProxies_10TupleProxy_present;
+ *(void(**)(void))&__pyx_vtable_10TabProxies_TupleProxy.copy = (void(*)(void))__pyx_f_10TabProxies_10TupleProxy_copy;
+ *(void(**)(void))&__pyx_vtable_10TabProxies_TupleProxy.update = (void(*)(void))__pyx_f_10TabProxies_10TupleProxy_update;
+ #endif
if (PyType_Ready(&__pyx_type_10TabProxies_TupleProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 20; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
{
PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_10TabProxies_TupleProxy, "__setitem__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 20; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) {
- __pyx_wrapperbase_10TabProxies_10TupleProxy_5__setitem__ = *((PyWrapperDescrObject *)wrapper)->d_base;
- __pyx_wrapperbase_10TabProxies_10TupleProxy_5__setitem__.doc = __pyx_doc_10TabProxies_10TupleProxy_5__setitem__;
- ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_10TupleProxy_5__setitem__;
+ __pyx_wrapperbase_10TabProxies_10TupleProxy___setitem__ = *((PyWrapperDescrObject *)wrapper)->d_base;
+ __pyx_wrapperbase_10TabProxies_10TupleProxy___setitem__.doc = __pyx_doc_10TabProxies_10TupleProxy___setitem__;
+ ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_10TupleProxy___setitem__;
}
}
{
PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_10TabProxies_TupleProxy, "__next__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 20; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) {
- __pyx_wrapperbase_10TabProxies_10TupleProxy_8__next__ = *((PyWrapperDescrObject *)wrapper)->d_base;
- __pyx_wrapperbase_10TabProxies_10TupleProxy_8__next__.doc = __pyx_doc_10TabProxies_10TupleProxy_8__next__;
- ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_10TupleProxy_8__next__;
+ __pyx_wrapperbase_10TabProxies_10TupleProxy___next__ = *((PyWrapperDescrObject *)wrapper)->d_base;
+ __pyx_wrapperbase_10TabProxies_10TupleProxy___next__.doc = __pyx_doc_10TabProxies_10TupleProxy___next__;
+ ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_10TupleProxy___next__;
}
}
{
PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_10TabProxies_TupleProxy, "__str__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 20; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) {
- __pyx_wrapperbase_10TabProxies_10TupleProxy_9__str__ = *((PyWrapperDescrObject *)wrapper)->d_base;
- __pyx_wrapperbase_10TabProxies_10TupleProxy_9__str__.doc = __pyx_doc_10TabProxies_10TupleProxy_9__str__;
- ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_10TupleProxy_9__str__;
+ __pyx_wrapperbase_10TabProxies_10TupleProxy___str__ = *((PyWrapperDescrObject *)wrapper)->d_base;
+ __pyx_wrapperbase_10TabProxies_10TupleProxy___str__.doc = __pyx_doc_10TabProxies_10TupleProxy___str__;
+ ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_10TupleProxy___str__;
}
}
if (__Pyx_SetVtable(__pyx_type_10TabProxies_TupleProxy.tp_dict, __pyx_vtabptr_10TabProxies_TupleProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 20; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_ptype_10TabProxies_TupleProxy = &__pyx_type_10TabProxies_TupleProxy;
__pyx_vtabptr_10TabProxies_GTFProxy = &__pyx_vtable_10TabProxies_GTFProxy;
__pyx_vtable_10TabProxies_GTFProxy.__pyx_base = *__pyx_vtabptr_10TabProxies_TupleProxy;
+ #if PY_MAJOR_VERSION >= 3
__pyx_vtable_10TabProxies_GTFProxy.__pyx_base.getMaxFields = (int (*)(struct __pyx_obj_10TabProxies_TupleProxy *, size_t))__pyx_f_10TabProxies_8GTFProxy_getMaxFields;
__pyx_vtable_10TabProxies_GTFProxy.__pyx_base.update = (PyObject *(*)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t))__pyx_f_10TabProxies_8GTFProxy_update;
+ #else
+ *(void(**)(void))&__pyx_vtable_10TabProxies_GTFProxy.__pyx_base.getMaxFields = (void(*)(void))__pyx_f_10TabProxies_8GTFProxy_getMaxFields;
+ *(void(**)(void))&__pyx_vtable_10TabProxies_GTFProxy.__pyx_base.update = (void(*)(void))__pyx_f_10TabProxies_8GTFProxy_update;
+ #endif
__pyx_type_10TabProxies_GTFProxy.tp_base = __pyx_ptype_10TabProxies_TupleProxy;
- if (PyType_Ready(&__pyx_type_10TabProxies_GTFProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (PyType_Ready(&__pyx_type_10TabProxies_GTFProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 231; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
{
- PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_10TabProxies_GTFProxy, "__getattr__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_10TabProxies_GTFProxy, "__getattr__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 231; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) {
- __pyx_wrapperbase_10TabProxies_8GTFProxy_8__getattr__ = *((PyWrapperDescrObject *)wrapper)->d_base;
- __pyx_wrapperbase_10TabProxies_8GTFProxy_8__getattr__.doc = __pyx_doc_10TabProxies_8GTFProxy_8__getattr__;
- ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_8GTFProxy_8__getattr__;
+ __pyx_wrapperbase_10TabProxies_8GTFProxy___getattr__ = *((PyWrapperDescrObject *)wrapper)->d_base;
+ __pyx_wrapperbase_10TabProxies_8GTFProxy___getattr__.doc = __pyx_doc_10TabProxies_8GTFProxy___getattr__;
+ ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_8GTFProxy___getattr__;
}
}
- if (__Pyx_SetVtable(__pyx_type_10TabProxies_GTFProxy.tp_dict, __pyx_vtabptr_10TabProxies_GTFProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- if (__Pyx_SetAttrString(__pyx_m, "GTFProxy", (PyObject *)&__pyx_type_10TabProxies_GTFProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (__Pyx_SetVtable(__pyx_type_10TabProxies_GTFProxy.tp_dict, __pyx_vtabptr_10TabProxies_GTFProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 231; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (__Pyx_SetAttrString(__pyx_m, "GTFProxy", (PyObject *)&__pyx_type_10TabProxies_GTFProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 231; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_ptype_10TabProxies_GTFProxy = &__pyx_type_10TabProxies_GTFProxy;
__pyx_vtabptr_10TabProxies_NamedTupleProxy = &__pyx_vtable_10TabProxies_NamedTupleProxy;
__pyx_vtable_10TabProxies_NamedTupleProxy.__pyx_base = *__pyx_vtabptr_10TabProxies_TupleProxy;
__pyx_type_10TabProxies_NamedTupleProxy.tp_base = __pyx_ptype_10TabProxies_TupleProxy;
- if (PyType_Ready(&__pyx_type_10TabProxies_NamedTupleProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 493; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (PyType_Ready(&__pyx_type_10TabProxies_NamedTupleProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 488; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
{
- PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_10TabProxies_NamedTupleProxy, "__setattr__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 493; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_10TabProxies_NamedTupleProxy, "__setattr__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 488; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) {
__pyx_wrapperbase_10TabProxies_15NamedTupleProxy___setattr__ = *((PyWrapperDescrObject *)wrapper)->d_base;
__pyx_wrapperbase_10TabProxies_15NamedTupleProxy___setattr__.doc = __pyx_doc_10TabProxies_15NamedTupleProxy___setattr__;
((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_15NamedTupleProxy___setattr__;
}
}
- if (__Pyx_SetVtable(__pyx_type_10TabProxies_NamedTupleProxy.tp_dict, __pyx_vtabptr_10TabProxies_NamedTupleProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 493; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- if (__Pyx_SetAttrString(__pyx_m, "NamedTupleProxy", (PyObject *)&__pyx_type_10TabProxies_NamedTupleProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 493; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (__Pyx_SetVtable(__pyx_type_10TabProxies_NamedTupleProxy.tp_dict, __pyx_vtabptr_10TabProxies_NamedTupleProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 488; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (__Pyx_SetAttrString(__pyx_m, "NamedTupleProxy", (PyObject *)&__pyx_type_10TabProxies_NamedTupleProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 488; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_ptype_10TabProxies_NamedTupleProxy = &__pyx_type_10TabProxies_NamedTupleProxy;
__pyx_vtabptr_10TabProxies_BedProxy = &__pyx_vtable_10TabProxies_BedProxy;
__pyx_vtable_10TabProxies_BedProxy.__pyx_base = *__pyx_vtabptr_10TabProxies_NamedTupleProxy;
+ #if PY_MAJOR_VERSION >= 3
__pyx_vtable_10TabProxies_BedProxy.__pyx_base.__pyx_base.getMaxFields = (int (*)(struct __pyx_obj_10TabProxies_TupleProxy *, size_t))__pyx_f_10TabProxies_8BedProxy_getMaxFields;
__pyx_vtable_10TabProxies_BedProxy.__pyx_base.__pyx_base.update = (PyObject *(*)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t))__pyx_f_10TabProxies_8BedProxy_update;
+ #else
+ *(void(**)(void))&__pyx_vtable_10TabProxies_BedProxy.__pyx_base.__pyx_base.getMaxFields = (void(*)(void))__pyx_f_10TabProxies_8BedProxy_getMaxFields;
+ *(void(**)(void))&__pyx_vtable_10TabProxies_BedProxy.__pyx_base.__pyx_base.update = (void(*)(void))__pyx_f_10TabProxies_8BedProxy_update;
+ #endif
__pyx_type_10TabProxies_BedProxy.tp_base = __pyx_ptype_10TabProxies_NamedTupleProxy;
- if (PyType_Ready(&__pyx_type_10TabProxies_BedProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 512; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (PyType_Ready(&__pyx_type_10TabProxies_BedProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 507; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
{
- PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_10TabProxies_BedProxy, "__setattr__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 512; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_10TabProxies_BedProxy, "__setattr__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 507; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) {
- __pyx_wrapperbase_10TabProxies_8BedProxy_1__setattr__ = *((PyWrapperDescrObject *)wrapper)->d_base;
- __pyx_wrapperbase_10TabProxies_8BedProxy_1__setattr__.doc = __pyx_doc_10TabProxies_8BedProxy_1__setattr__;
- ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_8BedProxy_1__setattr__;
+ __pyx_wrapperbase_10TabProxies_8BedProxy___setattr__ = *((PyWrapperDescrObject *)wrapper)->d_base;
+ __pyx_wrapperbase_10TabProxies_8BedProxy___setattr__.doc = __pyx_doc_10TabProxies_8BedProxy___setattr__;
+ ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_10TabProxies_8BedProxy___setattr__;
}
}
- if (__Pyx_SetVtable(__pyx_type_10TabProxies_BedProxy.tp_dict, __pyx_vtabptr_10TabProxies_BedProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 512; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- if (__Pyx_SetAttrString(__pyx_m, "BedProxy", (PyObject *)&__pyx_type_10TabProxies_BedProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 512; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+ if (__Pyx_SetAttrString(__pyx_m, "BedProxy", (PyObject *)&__pyx_type_10TabProxies_BedProxy) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 507; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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__pyx_vtable_10TabProxies_VCFProxy.__pyx_base = *__pyx_vtabptr_10TabProxies_NamedTupleProxy;
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__pyx_vtable_10TabProxies_VCFProxy.__pyx_base.__pyx_base.update = (PyObject *(*)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t))__pyx_f_10TabProxies_8VCFProxy_update;
+ #else
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+ #endif
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/*--- Function import code ---*/
/*--- Execution code ---*/
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+ tstate->curexc_value = value;
+ tstate->curexc_traceback = tb;
+ Py_XDECREF(tmp_type);
+ Py_XDECREF(tmp_value);
+ Py_XDECREF(tmp_tb);
+}
+
+static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) {
+ PyThreadState *tstate = PyThreadState_GET();
+ *type = tstate->curexc_type;
+ *value = tstate->curexc_value;
+ *tb = tstate->curexc_traceback;
+
+ tstate->curexc_type = 0;
+ tstate->curexc_value = 0;
+ tstate->curexc_traceback = 0;
+}
+
+
+#if PY_MAJOR_VERSION < 3
+static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb) {
+ Py_XINCREF(type);
+ Py_XINCREF(value);
+ Py_XINCREF(tb);
+ /* First, check the traceback argument, replacing None with NULL. */
+ if (tb == Py_None) {
+ Py_DECREF(tb);
+ tb = 0;
+ }
+ else if (tb != NULL && !PyTraceBack_Check(tb)) {
+ PyErr_SetString(PyExc_TypeError,
+ "raise: arg 3 must be a traceback or None");
+ goto raise_error;
+ }
+ /* Next, replace a missing value with None */
+ if (value == NULL) {
+ value = Py_None;
+ Py_INCREF(value);
+ }
+ #if PY_VERSION_HEX < 0x02050000
+ if (!PyClass_Check(type))
+ #else
+ if (!PyType_Check(type))
+ #endif
+ {
+ /* Raising an instance. The value should be a dummy. */
+ if (value != Py_None) {
+ PyErr_SetString(PyExc_TypeError,
+ "instance exception may not have a separate value");
+ goto raise_error;
+ }
+ /* Normalize to raise <class>, <instance> */
+ Py_DECREF(value);
+ value = type;
+ #if PY_VERSION_HEX < 0x02050000
+ if (PyInstance_Check(type)) {
+ type = (PyObject*) ((PyInstanceObject*)type)->in_class;
+ Py_INCREF(type);
+ }
+ else {
+ type = 0;
+ PyErr_SetString(PyExc_TypeError,
+ "raise: exception must be an old-style class or instance");
+ goto raise_error;
+ }
+ #else
+ type = (PyObject*) Py_TYPE(type);
+ Py_INCREF(type);
+ if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
+ PyErr_SetString(PyExc_TypeError,
+ "raise: exception class must be a subclass of BaseException");
+ goto raise_error;
+ }
+ #endif
+ }
+
+ __Pyx_ErrRestore(type, value, tb);
+ return;
+raise_error:
+ Py_XDECREF(value);
+ Py_XDECREF(type);
+ Py_XDECREF(tb);
+ return;
+}
+
+#else /* Python 3+ */
+
+static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb) {
+ if (tb == Py_None) {
+ tb = 0;
+ } else if (tb && !PyTraceBack_Check(tb)) {
+ PyErr_SetString(PyExc_TypeError,
+ "raise: arg 3 must be a traceback or None");
+ goto bad;
+ }
+ if (value == Py_None)
+ value = 0;
+
+ if (PyExceptionInstance_Check(type)) {
+ if (value) {
+ PyErr_SetString(PyExc_TypeError,
+ "instance exception may not have a separate value");
+ goto bad;
+ }
+ value = type;
+ type = (PyObject*) Py_TYPE(value);
+ } else if (!PyExceptionClass_Check(type)) {
+ PyErr_SetString(PyExc_TypeError,
+ "raise: exception class must be a subclass of BaseException");
+ goto bad;
+ }
+
+ PyErr_SetObject(type, value);
+
+ if (tb) {
+ PyThreadState *tstate = PyThreadState_GET();
+ PyObject* tmp_tb = tstate->curexc_traceback;
+ if (tb != tmp_tb) {
+ Py_INCREF(tb);
+ tstate->curexc_traceback = tb;
+ Py_XDECREF(tmp_tb);
+ }
+ }
+
+bad:
+ return;
+}
+#endif
+
static CYTHON_INLINE PyObject *__Pyx_PyInt_to_py_uint32_t(uint32_t val) {
const uint32_t neg_one = (uint32_t)-1, const_zero = (uint32_t)0;
const int is_unsigned = const_zero < neg_one;
if (!result)
goto bad;
if (!PyType_Check(result)) {
- PyErr_Format(PyExc_TypeError,
+ PyErr_Format(PyExc_TypeError,
"%s.%s is not a type object",
module_name, class_name);
goto bad;
}
if (!strict && ((PyTypeObject *)result)->tp_basicsize > size) {
- PyOS_snprintf(warning, sizeof(warning),
+ PyOS_snprintf(warning, sizeof(warning),
"%s.%s size changed, may indicate binary incompatibility",
module_name, class_name);
#if PY_VERSION_HEX < 0x02050000
#endif
}
else if (((PyTypeObject *)result)->tp_basicsize != size) {
- PyErr_Format(PyExc_ValueError,
+ PyErr_Format(PyExc_ValueError,
"%s.%s has the wrong size, try recompiling",
module_name, class_name);
goto bad;
projects / pysam.git / blobdiff