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Imported Upstream version 0.3.1
[pysam.git]
/
pysam
/
__init__.py
diff --git
a/pysam/__init__.py
b/pysam/__init__.py
index 9f257c210eca878b0f0039b40f724f3482937284..282ef290770aad31aa1bbba8c3ebd1e1759263ab 100644
(file)
--- a/
pysam/__init__.py
+++ b/
pysam/__init__.py
@@
-55,7
+55,10
@@
class SamtoolsDispatcher(object):
# Ignore messages like these
stderr = [ x for x in stderr \
if not x.startswith( "[sam_header_read2]" ) or \
# Ignore messages like these
stderr = [ x for x in stderr \
if not x.startswith( "[sam_header_read2]" ) or \
- x.startswith("[bam_index_load]") ]
+ x.startswith("[bam_index_load]") or \
+ x.startswith("[bam_sort_core]") or \
+ x.startswith("[samopen] SAM header is present")
+ ]
if stderr: raise SamtoolsError( "\n".join( stderr ) )
# call parser for stdout:
if stderr: raise SamtoolsError( "\n".join( stderr ) )
# call parser for stdout: