+ "rmdup" : ("rmdup", None),
+ "reheader" : ("reheader", None),
+ "cat" : ("cat", None),
+ "targetcut" : ("targetcut", None),
+ "phase" : ("phase", None),
+ # others
+ "samimport": ( "import", None),
+ "bam2fq" : ("bam2fq", None),
+ # obsolete
+ # "pileup" : ( "pileup", ( (("-c",), Pileup.iterate ), ), ),
+
+ }