- "rmdup" : ("rmdup", None),
- "reheader" : ("reheader", None),
- "cat" : ("cat", None),
- "targetcut" : ("targetcut", None),
- "phase" : ("phase", None),
- # others
- "samimport": ( "import", None),
- "bam2fq" : ("bam2fq", None),
- # obsolete
- # "pileup" : ( "pileup", ( (("-c",), Pileup.iterate ), ), ),
-
- }