-cdef extern from "glf.h":
- ctypedef struct glf1_t:
- pass
-
-cdef extern from "bam_maqcns.h":
-
- ctypedef struct bam_maqcns_t:
- float het_rate, theta
- int n_hap, cap_mapQ, errmod, min_baseQ
- float eta, q_r
- double *fk, *coef
- double *lhet
- void *aux
-
- glf1_t *bam_maqcns_glfgen(int n,
- bam_pileup1_t *pl,
- uint8_t ref_base,
- bam_maqcns_t *bm)
-
- ctypedef struct bam_maqindel_opt_t:
- int q_indel
- float r_indel
- float r_snp
- int mm_penalty, indel_err, ambi_thres
+#cdef extern from "glf.h":
+# ctypedef struct glf1_t:
+# pass
+
+#cdef extern from "bam_maqcns.h":
+#
+# ctypedef struct bam_maqcns_t:
+# float het_rate, theta
+# int n_hap, cap_mapQ, errmod, min_baseQ
+# float eta, q_r
+# double *fk, *coef
+# double *lhet
+# void *aux
+
+# glf1_t *bam_maqcns_glfgen(int n,
+# bam_pileup1_t *pl,
+# uint8_t ref_base,
+# bam_maqcns_t *bm)
+
+# ctypedef struct bam_maqindel_opt_t:
+# int q_indel
+# float r_indel
+# float r_snp
+# int mm_penalty, indel_err, ambi_thres