// translate a reference string *s* to a tid
int pysam_reference2tid( bam_header_t *header, const char * s );
-// return number of mapped reads for tid
-uint32_t pysam_get_mapped( const bam_index_t *idx, const int tid );
-
-// return number of unmapped reads for tid
-uint32_t pysam_get_unmapped( const bam_index_t *idx, const int tid );
-
// debugging functions
-/* #include "glf.h" */
-/* uint32_t pysam_glf_depth( glf1_t * g); */
+#include "glf.h"
+uint32_t pysam_glf_depth( glf1_t * g);
-/* #include "bam_maqcns.h" */
-/* void pysam_dump_glf( glf1_t * g, bam_maqcns_t * c ); */
+#include "bam_maqcns.h"
+void pysam_dump_glf( glf1_t * g, bam_maqcns_t * c );
#endif