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Imported Upstream version 0.6
[pysam.git]
/
pysam
/
pysam_util.h
diff --git
a/pysam/pysam_util.h
b/pysam/pysam_util.h
index 89e381bbd8fee3762d56a1d7dad14b9c44f6b8a2..c6184eb756cca0241dc06449b829f4198ebef02a 100644
(file)
--- a/
pysam/pysam_util.h
+++ b/
pysam/pysam_util.h
@@
-48,12
+48,18
@@
extern unsigned char bam_nt16_table[256];
// translate a reference string *s* to a tid
int pysam_reference2tid( bam_header_t *header, const char * s );
// translate a reference string *s* to a tid
int pysam_reference2tid( bam_header_t *header, const char * s );
+// return number of mapped reads for tid
+uint32_t pysam_get_mapped( const bam_index_t *idx, const int tid );
+
+// return number of unmapped reads for tid
+uint32_t pysam_get_unmapped( const bam_index_t *idx, const int tid );
+
// debugging functions
// debugging functions
-#include "glf.h"
-uint32_t pysam_glf_depth( glf1_t * g);
+/* #include "glf.h" */
+/* uint32_t pysam_glf_depth( glf1_t * g); */
-#include "bam_maqcns.h"
-void pysam_dump_glf( glf1_t * g, bam_maqcns_t * c );
+/* #include "bam_maqcns.h" */
+/* void pysam_dump_glf( glf1_t * g, bam_maqcns_t * c ); */
#endif
#endif