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Imported Upstream version 0.5
[pysam.git]
/
samtools
/
bam2bcf.h
diff --git
a/samtools/bam2bcf.h
b/samtools/bam2bcf.h
index 4af080c4753b2070192bec5e04e16174ca5bb5f8..958567241936a4c54feae501c725ad77a6e3f1be 100644
(file)
--- a/
samtools/bam2bcf.h
+++ b/
samtools/bam2bcf.h
@@
-26,7
+26,6
@@
typedef struct {
int depth, ori_depth, qsum[4];
int anno[16];
float p[25];
int depth, ori_depth, qsum[4];
int anno[16];
float p[25];
- int mvd[3]; // mean variant distance, number of variant reads, average read length
} bcf_callret1_t;
typedef struct {
} bcf_callret1_t;
typedef struct {
@@
-34,7
+33,6
@@
typedef struct {
int n, n_alleles, shift, ori_ref, unseen;
int anno[16], depth, ori_depth;
uint8_t *PL;
int n, n_alleles, shift, ori_ref, unseen;
int anno[16], depth, ori_depth;
uint8_t *PL;
- float vdb; // variant distance bias
} bcf_call_t;
#ifdef __cplusplus
} bcf_call_t;
#ifdef __cplusplus