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Imported Upstream version 0.5
[pysam.git]
/
samtools
/
bcftools
/
bcf.h
diff --git
a/samtools/bcftools/bcf.h
b/samtools/bcftools/bcf.h
index 822ae5cf80fd7f9dc375259524935c933f088323..ba6dbe9b42ae033c6b3c179a730a48312cf927dd 100644
(file)
--- a/
samtools/bcftools/bcf.h
+++ b/
samtools/bcftools/bcf.h
@@
-28,8
+28,6
@@
#ifndef BCF_H
#define BCF_H
#ifndef BCF_H
#define BCF_H
-#define BCF_VERSION "0.1.17-dev (r973:277)"
-
#include <stdint.h>
#include <zlib.h>
#include <stdint.h>
#include <zlib.h>
@@
-152,10
+150,6
@@
extern "C" {
int bcf_fix_gt(bcf1_t *b);
// update PL generated by old samtools
int bcf_fix_pl(bcf1_t *b);
int bcf_fix_gt(bcf1_t *b);
// update PL generated by old samtools
int bcf_fix_pl(bcf1_t *b);
- // convert PL to GLF-like 10-likelihood GL
- int bcf_gl10(const bcf1_t *b, uint8_t *gl);
- // convert up to 4 INDEL alleles to GLF-like 10-likelihood GL
- int bcf_gl10_indel(const bcf1_t *b, uint8_t *gl);
// string hash table
void *bcf_build_refhash(bcf_hdr_t *h);
// string hash table
void *bcf_build_refhash(bcf_hdr_t *h);