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Merge tag 'upstream/0.7'
[pysam.git]
/
tests
/
Makefile
diff --git
a/tests/Makefile
b/tests/Makefile
index 34828290149d9e484c5638230c3d241975dc5eb9..2b401e55d7e449c1e9b61129f7bc5894697d4707 100644
(file)
--- a/
tests/Makefile
+++ b/
tests/Makefile
@@
-8,7
+8,10
@@
all: ex1.pileup.gz ex1.bam.bai \
ex8.bam ex8.bam.bai \
ex9_nofail.bam.bai \
ex9_fail.bam.bai \
ex8.bam ex8.bam.bai \
ex9_nofail.bam.bai \
ex9_fail.bam.bai \
- ex10.bam ex10.bam.bai
+ ex10.bam ex10.bam.bai \
+ example_unmapped_reads_no_sq.bam \
+ example_user_header.bam \
+ example_btag.bam
ex2.sam.gz: ex1.bam ex1.bam.bai
samtools view -h ex1.bam | gzip > ex2.sam.gz
ex2.sam.gz: ex1.bam ex1.bam.bai
samtools view -h ex1.bam | gzip > ex2.sam.gz
@@
-28,6
+31,11
@@
ex1.bam:ex1.sam.gz ex1.fa.fai
ex1.pileup.gz:ex1.bam ex1.fa
samtools pileup -cf ex1.fa ex1.bam | gzip > ex1.pileup.gz
ex1.pileup.gz:ex1.bam ex1.fa
samtools pileup -cf ex1.fa ex1.bam | gzip > ex1.pileup.gz
+example_unmapped_reads_no_sq.bam: example_unmapped_reads_no_sq.sam
+ touch tmp.list
+ samtools import tmp.list $< $@
+ rm -f tmp.list
+
clean:
rm -fr *.bam *.bai *.fai *.pileup* \
*~ calDepth *.dSYM pysam_*.sam \
clean:
rm -fr *.bam *.bai *.fai *.pileup* \
*~ calDepth *.dSYM pysam_*.sam \