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Merge commit 'upstream/0.5'
[pysam.git]
/
tests
/
Makefile
diff --git
a/tests/Makefile
b/tests/Makefile
index 38d30f0ccf480f42f9651579297733c541bbc0a3..34828290149d9e484c5638230c3d241975dc5eb9 100644
(file)
--- a/
tests/Makefile
+++ b/
tests/Makefile
@@
-1,11
+1,14
@@
-all: ex1.
glf ex1.pileup.gz ex1.bam.bai ex1.glfview.gz
\
+all: ex1.
pileup.gz ex1.bam.bai
\
ex2.sam.gz ex2.sam ex1.sam \
ex2.bam \
ex3.bam ex3.bam.bai \
ex4.bam ex4.bam.bai \
ex5.bam ex5.bam.bai \
ex6.bam \
ex2.sam.gz ex2.sam ex1.sam \
ex2.bam \
ex3.bam ex3.bam.bai \
ex4.bam ex4.bam.bai \
ex5.bam ex5.bam.bai \
ex6.bam \
- ex8.bam
+ ex8.bam ex8.bam.bai \
+ ex9_nofail.bam.bai \
+ ex9_fail.bam.bai \
+ ex10.bam ex10.bam.bai
ex2.sam.gz: ex1.bam ex1.bam.bai
samtools view -h ex1.bam | gzip > ex2.sam.gz
ex2.sam.gz: ex1.bam ex1.bam.bai
samtools view -h ex1.bam | gzip > ex2.sam.gz
@@
-24,10
+27,8
@@
ex1.bam:ex1.sam.gz ex1.fa.fai
samtools index $<
ex1.pileup.gz:ex1.bam ex1.fa
samtools pileup -cf ex1.fa ex1.bam | gzip > ex1.pileup.gz
samtools index $<
ex1.pileup.gz:ex1.bam ex1.fa
samtools pileup -cf ex1.fa ex1.bam | gzip > ex1.pileup.gz
-ex1.glf:ex1.bam ex1.fa
- samtools pileup -gf ex1.fa ex1.bam > ex1.glf
-ex1.glfview.gz:ex1.glf
- samtools glfview ex1.glf | gzip > ex1.glfview.gz
clean:
clean:
- rm -fr *.bam *.bai *.glf* *.fai *.pileup* *~ calDepth *.dSYM pysam_*.sam ex2.sam ex2.sam.gz ex1.sam
+ rm -fr *.bam *.bai *.fai *.pileup* \
+ *~ calDepth *.dSYM pysam_*.sam \
+ ex2.sam ex2.sam.gz ex1.sam