Merge tag 'upstream/0.7'
[pysam.git] / tests / vcf-examples / 9.vcf
diff --git a/tests/vcf-examples/9.vcf b/tests/vcf-examples/9.vcf
new file mode 100644 (file)
index 0000000..e0d112c
--- /dev/null
@@ -0,0 +1,1000 @@
+##fileformat=VCFv4.0
+#CHROM POS     ID      REF     ALT     QUAL    FILTER  INFO    FORMAT  DNA_pool_A
+chr1   1281168 .       A       G       14      .       DP=37;AF1=0.6243;CI95=0.5,1;DP4=4,0,6,0;MQ=15;PV4=1,0.027,1,1   PL:GT:GQ        43,0,4:0/1:6
+chr1   1281205 .       T       C       26      .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=41 PL:GT:GQ        58,9,0:1/1:63
+chr1   1281206 .       G       C       25      .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=41 PL:GT:GQ        57,9,0:1/1:63
+chr1   1922737 .       G       C       13.2    .       DP=21;AF1=1;CI95=1,1;DP4=0,0,0,21;MQ=22 PL:GT:GQ        46,63,0:1/1:99
+chr1   21197513        .       A       G       55.1    .       DP=9;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=41   PL:GT:GQ        88,21,0:1/1:84
+chr1   21343209        .       T       C       5.45    .       DP=17;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=14 PL:GT:GQ        37,51,0:1/1:99
+chr1   22097362        .       T       C       4.75    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=30        PL:GT:GQ        35,9,0:1/1:63
+chr1   22254012        .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:GT:GQ        40,6,0:1/1:49
+chr1   22650927        .       G       A       48.1    .       DP=11;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=24  PL:GT:GQ        81,21,0:1/1:84
+chr1   23535401        .       C       T       40.4    .       DP=25;AF1=1;CI95=0.5,1;DP4=0,16,0,5;MQ=19;PV4=1,0.2,1,1 PL:GT:GQ        73,13,0:1/1:65
+chr1   23543855        .       T       C       49.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=44 PL:GT:GQ        82,18,0:1/1:90
+chr1   24245107        .       C       G       32      .       DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=0,2,0,2;MQ=36;PV4=1,1,1,1      PL:GT:GQ        62,0,35:0/1:38
+chr1   24274412        .       G       C       39.5    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32 PL:GT:GQ        72,12,0:1/1:72
+chr1   36529832        .       C       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:GT:GQ        73,6,0:1/1:49
+chr1   37788090        .       A       G       89.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:GT:GQ        122,12,0:1/1:72
+chr1   43120440        .       C       T       34      .       DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,1,1,1      PL:GT:GQ        64,0,31:0/1:34
+chr1   43980466        .       C       T       43      .       DP=16;AF1=1;CI95=1,1;DP4=0,0,0,15;MQ=19 PL:GT:GQ        76,45,0:1/1:99
+chr1   46047795        .       T       C       29.1    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=31 PL:GT:GQ        62,18,0:1/1:90
+chr1   48860309        .       C       T       99      .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=46 PL:GT:GQ        141,18,0:1/1:90
+chr1   49415599        .       T       C       4.61    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=34 PL:GT:GQ        34,6,0:1/1:49
+chr1   51601816        .       G       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:GT:GQ        40,6,0:1/1:49
+chr1   51955459        .       G       C       89.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:GT:GQ        122,12,0:1/1:72
+chr1   68479569        .       T       G       12      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        43,6,0:1/1:49
+chr1   69032455        .       A       G       15.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=29 PL:GT:GQ        47,9,0:1/1:63
+chr1   71888225        .       G       T       9.31    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:GT:GQ        40,6,0:1/1:49
+chr1   72381528        .       T       C       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=41 PL:GT:GQ        76,9,0:1/1:63
+chr1   82004013        .       A       G       37.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:GT:GQ        70,12,0:1/1:72
+chr1   86289622        .       C       T       18      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=42 PL:GT:GQ        50,9,0:1/1:63
+chr1   90267663        .       A       G       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:GT:GQ        54,9,0:1/1:63
+chr1   92699542        .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:GT:GQ        40,6,0:1/1:49
+chr1   94867317        .       G       A       26.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:GT:GQ        58,6,0:1/1:49
+chr1   96428713        .       C       G       3.98    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=27 PL:GT:GQ        33,6,0:1/1:49
+chr1   100466329       .       G       C       4.85    .       DP=16;AF1=1;CI95=1,1;DP4=0,0,0,6;MQ=22  PL:GT:GQ        36,18,0:1/1:90
+chr1   101909281       .       G       A       70      .       DP=11;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=46;PV4=1,1,0.096,1    PL:GT:GQ        100,0,88:0/1:91
+chr1   106216572       .       T       A       22      .       DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=21 PL:GT:GQ        55,48,0:1/1:99
+chr1   107901770       .       T       C       9.31    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        40,6,0:1/1:49
+chr1   108431179       .       A       G       99      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=41   PL:GT:GQ        155,24,0:1/1:96
+chr1   112005344       .       C       T       99      .       DP=52;AF1=1;CI95=1,1;DP4=7,0,27,0;MQ=44;PV4=1,1,1,1     PL:GT:GQ        196,25,0:1/1:99
+chr1   116625452       .       C       T       36      .       DP=44;AF1=0.5;CI95=0.5,0.5;DP4=0,23,0,20;MQ=49;PV4=1,2.3e-69,0.42,1     PL:GT:GQ        66,0,179:0/1:69
+chr1   118060710       .       G       T       6.98    .       DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=47;PV4=1,0.0071,1,1 PL:GT:GQ        36,0,73:0/1:39
+chr1   118198177       .       A       G       15.9    .       DP=23;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43        PL:GT:GQ        47,6,0:1/1:49
+chr1   118586346       .       T       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr1   120809555       .       G       A       20      .       DP=8;AF1=0.5;CI95=0.5,0.5;DP4=6,0,2,0;MQ=46;PV4=1,1,1,1 PL:GT:GQ        50,0,106:0/1:53
+chr1   130723110       .       C       A       20.7    .       DP=8;AF1=0.5939;CI95=0.5,1;DP4=0,6,0,2;MQ=26;PV4=1,1,1,1        PL:GT:GQ        50,0,5:0/1:7
+chr1   133979895       .       T       C       14.9    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:GT:GQ        46,6,0:1/1:49
+chr1   134977940       .       C       T       30      .       DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,2;MQ=38;PV4=1,1,0.26,1   PL:GT:GQ        60,0,31:0/1:34
+chr1   141768589       .       G       A       18.1    .       DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=51;PV4=1,2.7e-05,1,1  PL:GT:GQ        48,0,100:0/1:51
+chr1   141768590       .       G       A       22      .       DP=15;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=50;PV4=1,0.0033,1,1   PL:GT:GQ        52,0,40:0/1:43
+chr1   146506051       .       T       C       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=43 PL:GT:GQ        76,9,0:1/1:63
+chr1   150997009       .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        40,6,0:1/1:49
+chr1   162915612       .       G       C       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr1   168455400       .       A       G       4.12    .       DP=28;AF1=1;CI95=1,1;DP4=0,0,0,27;MQ=10 PL:GT:GQ        35,81,0:1/1:99
+chr1   172784744       .       T       C       17.8    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:GT:GQ        49,6,0:1/1:49
+chr1   183627307       .       G       A       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr1   185789457       .       T       C       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:GT:GQ        73,6,0:1/1:49
+chr1   187081827       .       T       C       4.77    .       DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=17 PL:GT:GQ        36,30,0:1/1:99
+chr1   188468339       .       C       T       33      .       DP=25;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=24 PL:GT:GQ        66,39,0:1/1:99
+chr1   188595435       .       C       T       41.8    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr1   188670561       .       G       C       3.55    .       DP=22;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=18  PL:GT:GQ        34,27,0:1/1:99
+chr1   188924877       .       G       A       6.2     .       DP=10;AF1=0.9999;CI95=0.5,1;DP4=2,0,3,0;MQ=21;PV4=1,1,1,0.3     PL:GT:GQ        35,3,0:1/1:41
+chr1   190536295       .       G       A       68      .       DP=38;AF1=1;CI95=1,1;DP4=0,0,36,0;MQ=18 PL:GT:GQ        101,108,0:1/1:99
+chr1   191129408       .       T       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:GT:GQ        40,6,0:1/1:49
+chr1   195937816       .       T       C       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr1   198857619       .       T       C       89      .       DP=61;AF1=0.5;CI95=0.5,0.5;DP4=0,38,0,17;MQ=30;PV4=1,0.032,1,1  PL:GT:GQ        119,0,139:0/1:99
+chr1   199057483       .       T       C       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32 PL:GT:GQ        44,6,0:1/1:49
+chr1   200133619       .       G       C       5.83    .       DP=49;AF1=1;CI95=0.5,1;DP4=2,0,8,0;MQ=17;PV4=1,0.059,1,0.2      PL:GT:GQ        37,12,0:1/1:72
+chr1   200729661       .       A       T       36      .       DP=15;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=27 PL:GT:GQ        69,42,0:1/1:99
+chr1   201374519       .       T       C       69.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=39 PL:GT:GQ        102,12,0:1/1:72
+chr1   202811668       .       G       A       20.2    .       DP=4;AF1=0.5163;CI95=0.5,1;DP4=0,1,0,3;MQ=24;PV4=1,1,1,1        PL:GT:GQ        50,0,12:0/1:15
+chr1   202960650       .       C       T       16.6    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=27 PL:GT:GQ        49,12,0:1/1:72
+chr1   205686638       .       C       T       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=42 PL:GT:GQ        43,9,0:1/1:63
+chr1   205949857       .       A       G       3.14    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=21 PL:GT:GQ        33,15,0:1/1:75
+chr1   209806643       .       A       G       13.2    .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=21   PL:GT:GQ        46,24,0:1/1:96
+chr1   209871501       .       C       T       25      .       DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=41;PV4=1,7.7e-06,1,1  PL:GT:GQ        55,0,84:0/1:58
+chr1   211051323       .       G       A       99      .       DP=14;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=49  PL:GT:GQ        176,24,0:1/1:96
+chr1   211389716       .       C       T       12      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32 PL:GT:GQ        43,6,0:1/1:49
+chr1   211868415       .       G       A       3.54    .       DP=11;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=14 PL:GT:GQ        34,33,0:1/1:99
+chr1   211914531       .       C       T       84.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,1,0,4;MQ=46;PV4=1,1,1,1     PL:GT:GQ        116,7,0:1/1:57
+chr1   214691313       .       A       G       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:GT:GQ        54,9,0:1/1:63
+chr1   215184650       .       C       T       40.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:GT:GQ        72,6,0:1/1:49
+chr1   215995258       .       A       G       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:GT:GQ        100,9,0:1/1:63
+chr1   217031394       .       G       C       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr1   217986960       .       T       C       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=36 PL:GT:GQ        76,9,0:1/1:63
+chr1   218086681       .       A       G       99      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=34  PL:GT:GQ        142,27,0:1/1:99
+chr1   218546019       .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:GT:GQ        40,6,0:1/1:49
+chr1   218632417       .       G       T       17.1    .       DP=19;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=26  PL:GT:GQ        50,21,0:1/1:84
+chr1   218833355       .       C       G       23      .       DP=7;AF1=0.5;CI95=0.5,0.5;DP4=5,0,2,0;MQ=39;PV4=1,1,1,1 PL:GT:GQ        53,0,63:0/1:56
+chr1   219303186       .       T       C       7.79    .       DP=25;AF1=1;CI95=1,1;DP4=0,0,0,25;MQ=12 PL:GT:GQ        40,75,0:1/1:99
+chr1   219517634       .       G       A       26.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=42 PL:GT:GQ        59,12,0:1/1:72
+chr1   219590158       .       T       C       3.27    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25 PL:GT:GQ        33,12,0:1/1:72
+chr1   219709853       .       A       T       99      .       DP=124;AF1=0.5;CI95=0.5,0.5;DP4=80,0,41,0;MQ=44;PV4=1,0.26,1,1  PL:GT:GQ        143,0,156:0/1:99
+chr1   222457988       .       A       G       11.1    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=23 PL:GT:GQ        42,6,0:1/1:49
+chr1   222477914       .       A       G       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=39 PL:GT:GQ        43,9,0:1/1:63
+chr1   223010233       .       A       G       18.6    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25 PL:GT:GQ        51,12,0:1/1:72
+chr1   223796360       .       G       A       6.79    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=21 PL:GT:GQ        37,6,0:1/1:49
+chr1   224273784       .       A       T       14.2    .       DP=18;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=15 PL:GT:GQ        47,30,0:1/1:99
+chr1   224454685       .       C       T       46.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=32 PL:GT:GQ        79,15,0:1/1:75
+chr1   224514706       .       G       C       21      .       DP=38;AF1=1;CI95=1,1;DP4=0,0,38,0;MQ=19 PL:GT:GQ        54,114,0:1/1:99
+chr1   224515793       .       C       T       99      .       DP=26;AF1=1;CI95=1,1;DP4=0,0,26,0;MQ=45 PL:GT:GQ        211,78,0:1/1:99
+chr1   224692969       .       C       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=36 PL:GT:GQ        40,6,0:1/1:49
+chr1   225607249       .       A       G       34      .       DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,1,0,1      PL:GT:GQ        64,0,31:0/1:34
+chr1   226923918       .       C       A       29.1    .       DP=52;AF1=1;CI95=0.5,1;DP4=0,2,0,10;MQ=27;PV4=1,1,1,1   PL:GT:GQ        62,18,0:1/1:90
+chr1   227125189       .       T       C       56.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=41 PL:GT:GQ        89,12,0:1/1:72
+chr1   227133712       .       A       T       20.1    .       DP=26;AF1=0.5;CI95=0.5,0.5;DP4=11,0,10,0;MQ=23;PV4=1,1,0.48,1   PL:GT:GQ        50,0,39:0/1:42
+chr1   227943954       .       G       C       47      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=37 PL:GT:GQ        79,9,0:1/1:63
+chr1   227943974       .       G       A       33.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=34 PL:GT:GQ        66,12,0:1/1:72
+chr1   228067480       .       A       G       42.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=45 PL:GT:GQ        75,15,0:1/1:75
+chr1   228067510       .       A       G       99      .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=45 PL:GT:GQ        140,15,0:1/1:75
+chr1   228088778       .       C       T       6.79    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=23 PL:GT:GQ        37,6,0:1/1:49
+chr1   228117888       .       A       C       13.9    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=40 PL:GT:GQ        45,6,0:1/1:49
+chr1   228139641       .       T       C       44.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=35 PL:GT:GQ        77,12,0:1/1:72
+chr1   228577146       .       T       C       26      .       DP=41;AF1=0.5;CI95=0.5,0.5;DP4=0,25,0,14;MQ=22;PV4=1,1,1,0.027  PL:GT:GQ        56,0,77:0/1:59
+chr1   229001369       .       C       A       45      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=41 PL:GT:GQ        77,9,0:1/1:63
+chr1   229001386       .       C       T       8.44    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:GT:GQ        39,6,0:1/1:49
+chr1   229348080       .       T       C       18.1    .       DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,2;MQ=40;PV4=1,0.33,0.17,0.33     PL:GT:GQ        48,0,31:0/1:34
+chr1   229439710       .       C       T       33.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=32 PL:GT:GQ        66,12,0:1/1:72
+chr1   229655149       .       T       C       30      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=30   PL:GT:GQ        63,24,0:1/1:96
+chr1   229660873       .       C       G       81      .       DP=28;AF1=0.5;CI95=0.5,0.5;DP4=0,20,0,7;MQ=36;PV4=1,1,1,1       PL:GT:GQ        111,0,120:0/1:99
+chr2a  3661005 .       C       G       24      .       DP=13;AF1=0.5001;CI95=0.5,0.5;DP4=7,0,4,0;MQ=27;PV4=1,1.1e-05,1,1       PL:GT:GQ        54,0,34:0/1:37
+chr2a  4140063 .       G       A       81      .       DP=26;AF1=0.6671;CI95=0.5,1;DP4=18,0,8,0;MQ=24;PV4=1,8.3e-09,1,1        PL:GT:GQ        110,0,3:0/1:5
+chr2a  4248440 .       T       C       20      .       DP=28;AF1=0.5;CI95=0.5,0.5;DP4=11,0,7,0;MQ=25;PV4=1,1,0.47,1    PL:GT:GQ        50,0,92:0/1:53
+chr2a  4707656 .       A       G       63      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        95,9,0:1/1:63
+chr2a  5194801 .       G       A       7.59    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=24 PL:GT:GQ        38,6,0:1/1:49
+chr2a  14111103        .       A       G       7.84    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=20   PL:GT:GQ        40,21,0:1/1:84
+chr2a  17799746        .       A       G       11.3    .       DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,2;MQ=32;PV4=1,1,1,1      PL:GT:GQ        41,0,35:0/1:37
+chr2a  24728910        .       G       A       45.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=28 PL:GT:GQ        78,15,0:1/1:75
+chr2a  29627939        .       G       T       5.44    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=27 PL:GT:GQ        36,9,0:1/1:63
+chr2a  31373164        .       C       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:GT:GQ        73,6,0:1/1:49
+chr2a  33935228        .       T       C       41.8    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=51 PL:GT:GQ        73,6,0:1/1:49
+chr2a  36311856        .       G       A       99      .       DP=30;AF1=1;CI95=1,1;DP4=0,0,0,29;MQ=44 PL:GT:GQ        213,87,0:1/1:99
+chr2a  39281204        .       T       C       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        100,9,0:1/1:63
+chr2a  41087565        .       C       T       74.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=38 PL:GT:GQ        107,12,0:1/1:72
+chr2a  45574768        .       C       A       11.3    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=18 PL:GT:GQ        43,9,0:1/1:63
+chr2a  55464464        .       T       C       26.1    .       DP=7;AF1=0.9966;CI95=0.5,1;DP4=5,0,2,0;MQ=26;PV4=1,1,1,1        PL:GT:GQ        55,1,0:1/1:23
+chr2a  63107673        .       T       A       70.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=34 PL:GT:GQ        103,12,0:1/1:72
+chr2a  63141732        .       A       T       22.8    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:GT:GQ        54,6,0:1/1:49
+chr2a  63141910        .       G       A       3.41    .       DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32        PL:GT:GQ        32,6,0:1/1:49
+chr2a  63141911        .       C       T       9.55    .       DP=16;AF1=0.5031;CI95=0.5,0.5;DP4=0,2,0,3;MQ=33;PV4=1,0.43,1,1  PL:GT:GQ        39,0,19:0/1:22
+chr2a  63143543        .       C       T       28      .       DP=18;AF1=1;CI95=1,1;DP4=0,1,0,17;MQ=16;PV4=1,1,1,1     PL:GT:GQ        61,42,0:1/1:99
+chr2a  66419805        .       G       A       3.69    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=23 PL:GT:GQ        34,15,0:1/1:75
+chr2a  66563922        .       C       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=51 PL:GT:GQ        40,6,0:1/1:49
+chr2a  67719136        .       C       T       39.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:GT:GQ        71,6,0:1/1:49
+chr2a  72781453        .       A       C       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:GT:GQ        73,6,0:1/1:49
+chr2a  76733211        .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        40,6,0:1/1:49
+chr2a  78190502        .       A       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        40,6,0:1/1:49
+chr2a  85021209        .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr2a  88554861        .       A       T       39      .       DP=74;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=46;PV4=1,1,1,1        PL:GT:GQ        69,0,92:0/1:72
+chr2a  88554877        .       A       G       92      .       DP=90;AF1=0.5;CI95=0.5,0.5;DP4=0,23,0,13;MQ=41;PV4=1,0.3,1,1    PL:GT:GQ        122,0,128:0/1:99
+chr2a  88824857        .       G       A       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37 PL:GT:GQ        45,6,0:1/1:49
+chr2a  93546675        .       C       T       26      .       DP=6;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,0;MQ=46;PV4=1,1,1,1 PL:GT:GQ        56,0,87:0/1:59
+chr2a  94788853        .       A       G       34.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=43 PL:GT:GQ        67,15,0:1/1:75
+chr2a  96738146        .       T       C       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=40 PL:GT:GQ        43,9,0:1/1:63
+chr2a  102737384       .       A       G       12.3    .       DP=18;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=11 PL:GT:GQ        45,54,0:1/1:99
+chr2a  103407172       .       A       G       35      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=19   PL:GT:GQ        68,24,0:1/1:96
+chr2a  105774580       .       T       G       99      .       DP=13;AF1=1;CI95=1,1;DP4=0,0,13,0;MQ=30 PL:GT:GQ        135,39,0:1/1:99
+chr2a  106376301       .       C       G       24.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=19 PL:GT:GQ        57,18,0:1/1:90
+chr2a  106376315       .       C       T       8.75    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=19 PL:GT:GQ        41,18,0:1/1:90
+chr2a  112422267       .       C       T       30      .       DP=20;AF1=0.5;CI95=0.5,0.5;DP4=14,0,5,0;MQ=39;PV4=1,1,1,1       PL:GT:GQ        60,0,131:0/1:63
+chr2b  3049384 .       A       C       14.9    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:GT:GQ        46,6,0:1/1:49
+chr2b  3049385 .       G       C       14.9    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:GT:GQ        46,6,0:1/1:49
+chr2b  3049406 .       C       G       99      .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=36 PL:GT:GQ        135,18,0:1/1:90
+chr2b  4213802 .       T       C       89.5    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49        PL:GT:GQ        122,12,0:1/1:72
+chr2b  5022895 .       G       A       66      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=49 PL:GT:GQ        99,30,0:1/1:99
+chr2b  6037666 .       G       T       56      .       DP=18;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=17 PL:GT:GQ        89,39,0:1/1:99
+chr2b  13656952        .       G       A       19.2    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=21 PL:GT:GQ        52,18,0:1/1:90
+chr2b  15026944        .       A       G       6.79    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32 PL:GT:GQ        37,6,0:1/1:49
+chr2b  23362613        .       A       G       5.64    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=22 PL:GT:GQ        37,15,0:1/1:75
+chr2b  45947861        .       C       G       68      .       DP=11;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=50 PL:GT:GQ        101,33,0:1/1:99
+chr2b  46597824        .       T       C       65.6    .       DP=39;AF1=0.5939;CI95=0.5,1;DP4=23,0,10,0;MQ=22;PV4=1,0.014,1,1 PL:GT:GQ        95,0,5:0/1:7
+chr2b  49665191        .       G       T       34.1    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=37   PL:GT:GQ        67,21,0:1/1:84
+chr2b  61001546        .       A       G       48      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=26   PL:GT:GQ        81,24,0:1/1:96
+chr2b  88502851        .       T       C       4.77    .       DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=37;PV4=1,1,0.46,1      PL:GT:GQ        33,0,34:0/1:33
+chr2b  91675431        .       C       T       30      .       DP=14;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=27  PL:GT:GQ        63,24,0:1/1:96
+chr2b  91870148        .       T       G       67      .       DP=14;AF1=1;CI95=1,1;DP4=0,1,0,13;MQ=47;PV4=1,1,1,1     PL:GT:GQ        100,31,0:1/1:99
+chr2b  97066826        .       G       A       20.1    .       DP=9;AF1=0.5001;CI95=0.5,0.5;DP4=0,6,0,2;MQ=31;PV4=1,1,1,1      PL:GT:GQ        50,0,35:0/1:38
+chr2b  97670822        .       G       A       4.85    .       DP=6;AF1=1;CI95=1,1;DP4=0,0,0,6;MQ=18   PL:GT:GQ        36,18,0:1/1:90
+chr2b  102773175       .       A       G       17.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=38 PL:GT:GQ        49,9,0:1/1:63
+chr2b  109805532       .       T       C       99      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=45   PL:GT:GQ        176,24,0:1/1:96
+chr2b  110841448       .       A       G       11.1    .       DP=20;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44        PL:GT:GQ        42,6,0:1/1:49
+chr2b  123217025       .       T       C       31.5    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=37 PL:GT:GQ        64,12,0:1/1:72
+chr2b  123263214       .       A       G       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=35 PL:GT:GQ        43,9,0:1/1:63
+chr2b  127747292       .       C       T       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=52 PL:GT:GQ        100,9,0:1/1:63
+chr2b  130121958       .       A       G       89.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=43 PL:GT:GQ        122,15,0:1/1:75
+chr2b  130253633       .       A       G       14.9    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:GT:GQ        46,6,0:1/1:49
+chr2b  130692761       .       C       T       49.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=51 PL:GT:GQ        82,18,0:1/1:90
+chr2b  130743365       .       A       G       99      .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=42 PL:GT:GQ        140,15,0:1/1:75
+chr2b  131553874       .       A       C       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=37 PL:GT:GQ        43,9,0:1/1:63
+chr2b  131716894       .       A       G       99      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=40   PL:GT:GQ        137,24,0:1/1:96
+chr2b  131716936       .       G       A       99      .       DP=14;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=36 PL:GT:GQ        173,36,0:1/1:99
+chr2b  131716952       .       A       G       99      .       DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,14;MQ=36;PV4=1,1,1,1       PL:GT:GQ        152,0,43:0/1:46
+chr2b  133360184       .       C       T       99      .       DP=20;AF1=1;CI95=1,1;DP4=0,0,0,20;MQ=32 PL:GT:GQ        163,60,0:1/1:99
+chr2b  133644741       .       T       A       16.4    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=27 PL:GT:GQ        49,15,0:1/1:75
+chr2b  133720595       .       T       C       41      .       DP=15;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=29 PL:GT:GQ        74,36,0:1/1:99
+chr2b  133727192       .       C       T       19.3    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=23 PL:GT:GQ        52,15,0:1/1:75
+chr2b  133727260       .       G       A       3.56    .       DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=18   PL:GT:GQ        34,24,0:1/1:95
+chr2b  133800294       .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=23 PL:GT:GQ        40,6,0:1/1:49
+chr2b  134582754       .       A       C       56.1    .       DP=37;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=36  PL:GT:GQ        89,21,0:1/1:84
+chr2b  134582763       .       G       C       78      .       DP=37;AF1=1;CI95=1,1;DP4=0,0,0,36;MQ=34 PL:GT:GQ        111,108,0:1/1:99
+chr2b  134809668       .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr3   527814  .       C       G       46      .       DP=9;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=43;PV4=1,1,1,1 PL:GT:GQ        76,0,106:0/1:79
+chr3   559510  .       G       A       38      .       DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,0,17,0;MQ=28;PV4=1,1,0.014,1  PL:GT:GQ        68,0,111:0/1:71
+chr3   879433  .       T       G       32      .       DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=43;PV4=1,1,1,1      PL:GT:GQ        62,0,34:0/1:37
+chr3   1809645 .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=51 PL:GT:GQ        73,6,0:1/1:49
+chr3   3235812 .       C       T       7.59    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:GT:GQ        38,6,0:1/1:49
+chr3   3250176 .       A       G       83      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=32   PL:GT:GQ        116,24,0:1/1:96
+chr3   5049073 .       T       A       99      .       DP=25;AF1=0.5;CI95=0.5,0.5;DP4=16,0,9,0;MQ=39;PV4=1,1,1,1       PL:GT:GQ        136,0,129:0/1:99
+chr3   5142874 .       G       A       99      .       DP=38;AF1=1;CI95=1,1;DP4=0,0,38,0;MQ=28 PL:GT:GQ        179,114,0:1/1:99
+chr3   5554864 .       T       C       3.54    .       DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,3;MQ=27;PV4=1,1,1,1      PL:GT:GQ        31,0,35:0/1:33
+chr3   5749648 .       G       A       21.2    .       DP=26;AF1=0.7303;CI95=0.5,1;DP4=0,7,0,7;MQ=26;PV4=1,0.16,1,0.17 PL:GT:GQ        50,0,2:0/1:3
+chr3   16451708        .       A       T       71.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=38 PL:GT:GQ        104,15,0:1/1:75
+chr3   23410276        .       G       A       99      .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=45 PL:GT:GQ        140,15,0:1/1:75
+chr3   51368824        .       A       G       28      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:GT:GQ        60,9,0:1/1:63
+chr3   53000453        .       A       G       54      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=19 PL:GT:GQ        87,30,0:1/1:99
+chr3   53000463        .       A       G       54      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=19 PL:GT:GQ        87,30,0:1/1:99
+chr3   59077423        .       C       T       77.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=33 PL:GT:GQ        110,15,0:1/1:75
+chr3   60040501        .       T       C       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=35 PL:GT:GQ        43,9,0:1/1:63
+chr3   64203481        .       A       G       33.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:GT:GQ        66,12,0:1/1:72
+chr3   67947441        .       C       T       17.6    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25 PL:GT:GQ        50,12,0:1/1:72
+chr3   76372631        .       A       G       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=36 PL:GT:GQ        76,9,0:1/1:63
+chr3   80611316        .       C       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr3   81554381        .       G       T       17.6    .       DP=24;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=26        PL:GT:GQ        50,12,0:1/1:72
+chr3   87614647        .       A       G       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=34 PL:GT:GQ        45,6,0:1/1:49
+chr3   93900455        .       A       T       11.6    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=13 PL:GT:GQ        44,15,0:1/1:75
+chr3   96174457        .       A       G       4.11    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=24 PL:GT:GQ        34,9,0:1/1:63
+chr3   96215569        .       A       C       3.41    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32 PL:GT:GQ        32,6,0:1/1:49
+chr3   96587998        .       A       C       7.08    .       DP=9;AF1=1;CI95=1,1;DP4=0,0,6,0;MQ=17   PL:GT:GQ        39,18,0:1/1:90
+chr3   99711220        .       A       C       12.8    .       DP=11;AF1=0.9998;CI95=0.5,1;DP4=1,0,2,0;MQ=35;PV4=1,1,1,1       PL:GT:GQ        42,2,0:1/1:37
+chr3   99789741        .       C       G       99      .       DP=18;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=47 PL:GT:GQ        210,51,0:1/1:99
+chr3   103667651       .       A       C       3.98    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37 PL:GT:GQ        33,6,0:1/1:49
+chr3   104604896       .       G       C       55      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:GT:GQ        87,9,0:1/1:63
+chr3   104997217       .       G       A       33.1    .       DP=18;AF1=1;CI95=1,1;DP4=1,0,16,0;MQ=34;PV4=1,3e-10,0.17,0.36   PL:GT:GQ        66,19,0:1/1:76
+chr3   106097816       .       A       G       28      .       DP=15;AF1=1;CI95=1,1;DP4=0,0,0,15;MQ=26 PL:GT:GQ        61,45,0:1/1:99
+chr3   106822259       .       G       C       99      .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=50 PL:GT:GQ        140,15,0:1/1:75
+chr3   109946413       .       G       A       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=34 PL:GT:GQ        44,6,0:1/1:49
+chr3   121238963       .       T       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=51 PL:GT:GQ        40,6,0:1/1:49
+chr3   126248567       .       A       G       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=33 PL:GT:GQ        45,6,0:1/1:49
+chr3   129733836       .       A       G       6.2     .       DP=4;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,3,0;MQ=43;PV4=1,0.02,0.31,1        PL:GT:GQ        35,0,28:0/1:30
+chr3   131372785       .       C       T       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=34 PL:GT:GQ        76,9,0:1/1:63
+chr3   132290987       .       C       T       22      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:GT:GQ        54,9,0:1/1:63
+chr3   136054421       .       C       T       73      .       DP=82;AF1=1;CI95=1,1;DP4=0,0,78,0;MQ=28 PL:GT:GQ        106,235,0:1/1:99
+chr3   141075246       .       G       A       30.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=41 PL:GT:GQ        62,6,0:1/1:49
+chr3   141075262       .       T       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=41 PL:GT:GQ        73,6,0:1/1:49
+chr3   141430649       .       G       T       81.8    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,1,0,4;MQ=41;PV4=1,0.34,1,0.25       PL:GT:GQ        113,6,0:1/1:49
+chr3   143617747       .       G       T       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=29 PL:GT:GQ        54,9,0:1/1:63
+chr3   163576128       .       C       T       5.6     .       DP=4;AF1=0.7302;CI95=0.5,1;DP4=2,0,2,0;MQ=23;PV4=1,1,1,1        PL:GT:GQ        33,0,2:0/1:3
+chr3   163839828       .       A       G       4.45    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=26 PL:GT:GQ        35,12,0:1/1:72
+chr3   175839340       .       G       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=51 PL:GT:GQ        40,6,0:1/1:49
+chr3   190193258       .       G       T       3.98    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        33,6,0:1/1:49
+chr3   190777007       .       G       A       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr3   190970350       .       A       G       61      .       DP=11;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=37 PL:GT:GQ        94,30,0:1/1:99
+chr3   198686408       .       G       A       36.6    .       DP=17;AF1=1;CI95=0.5,1;DP4=0,1,0,16;MQ=25;PV4=1,1,0.026,1       PL:GT:GQ        69,11,0:1/1:66
+chr3   199277478       .       T       C       3.61    .       DP=6;AF1=1;CI95=1,1;DP4=0,0,0,6;MQ=21   PL:GT:GQ        34,18,0:1/1:90
+chr3   199780181       .       G       T       77      .       DP=45;AF1=0.5;CI95=0.5,0.5;DP4=0,35,0,10;MQ=33;PV4=1,1,1,1      PL:GT:GQ        107,0,114:0/1:99
+chr3   199889335       .       A       C       9.54    .       DP=16;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=18  PL:GT:GQ        42,24,0:1/1:96
+chr3   200018161       .       A       G       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=31 PL:GT:GQ        45,6,0:1/1:49
+chr4   195475  .       A       G       13      .       DP=13;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47        PL:GT:GQ        44,6,0:1/1:49
+chr4   639141  .       C       A       14.9    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42        PL:GT:GQ        46,6,0:1/1:49
+chr4   639152  .       C       T       15.2    .       DP=17;AF1=0.5016;CI95=0.5,0.5;DP4=0,2,0,2;MQ=33;PV4=1,1,1,1     PL:GT:GQ        45,0,22:0/1:25
+chr4   986497  .       G       T       99      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=33 PL:GT:GQ        163,30,0:1/1:99
+chr4   986516  .       C       T       55.1    .       DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=37   PL:GT:GQ        88,21,0:1/1:84
+chr4   1207485 .       A       C       14.9    .       DP=22;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45        PL:GT:GQ        46,6,0:1/1:49
+chr4   1323502 .       G       A       13.2    .       DP=13;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=22 PL:GT:GQ        46,33,0:1/1:99
+chr4   1613521 .       G       A       89      .       DP=16;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=32 PL:GT:GQ        122,48,0:1/1:99
+chr4   1748790 .       C       T       38      .       DP=21;AF1=0.5005;CI95=0.5,0.5;DP4=6,0,8,0;MQ=40;PV4=1,0.09,1,1  PL:GT:GQ        68,0,27:0/1:30
+chr4   2255732 .       T       C       99      .       DP=29;AF1=1;CI95=1,1;DP4=0,0,28,0;MQ=31 PL:GT:GQ        186,84,0:1/1:99
+chr4   3010159 .       C       T       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=31 PL:GT:GQ        45,6,0:1/1:49
+chr4   3545023 .       A       G       99      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=38   PL:GT:GQ        145,27,0:1/1:99
+chr4   3586344 .       C       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:GT:GQ        73,6,0:1/1:49
+chr4   3879337 .       A       G       16.6    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25 PL:GT:GQ        49,12,0:1/1:72
+chr4   3940733 .       A       G       47.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=31 PL:GT:GQ        80,15,0:1/1:75
+chr4   4410338 .       T       C       13.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=31 PL:GT:GQ        46,15,0:1/1:75
+chr4   4796408 .       T       C       41      .       DP=16;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=17 PL:GT:GQ        74,48,0:1/1:99
+chr4   4796414 .       A       G       11.3    .       DP=16;AF1=1;CI95=1,1;DP4=0,0,0,15;MQ=17 PL:GT:GQ        44,45,0:1/1:99
+chr4   6436959 .       T       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:GT:GQ        40,6,0:1/1:49
+chr4   9494256 .       T       C       3.41    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37 PL:GT:GQ        32,6,0:1/1:49
+chr4   24881479        .       G       A       14.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=42 PL:GT:GQ        46,9,0:1/1:63
+chr4   26128644        .       A       G       23      .       DP=18;AF1=0.5006;CI95=0.5,0.5;DP4=8,0,10,0;MQ=22;PV4=1,1,1,1    PL:GT:GQ        53,0,26:0/1:29
+chr4   42109100        .       G       A       17.1    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:GT:GQ        49,9,0:1/1:63
+chr4   42309652        .       C       T       68      .       DP=17;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50        PL:GT:GQ        100,9,0:1/1:63
+chr4   46913966        .       C       T       9.08    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=16 PL:GT:GQ        41,12,0:1/1:72
+chr4   50335142        .       A       G       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=41 PL:GT:GQ        76,9,0:1/1:63
+chr4   51658550        .       C       A       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:GT:GQ        44,6,0:1/1:49
+chr4   58258023        .       T       C       26      .       DP=5;AF1=0.5002;CI95=0.5,0.5;DP4=0,3,0,2;MQ=34;PV4=1,1,1,0.05   PL:GT:GQ        56,0,32:0/1:35
+chr4   59219112        .       C       A       42.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:GT:GQ        75,12,0:1/1:72
+chr4   62746067        .       C       T       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr4   67404338        .       G       T       33.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=39 PL:GT:GQ        66,12,0:1/1:72
+chr4   73353380        .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr4   73946294        .       G       C       4.77    .       DP=51;AF1=0.4999;CI95=0.5,0.5;DP4=0,5,0,3;MQ=40;PV4=1,0.19,0.37,0.11    PL:GT:GQ        33,0,64:0/1:36
+chr4   79607484        .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr4   82337365        .       G       C       90      .       DP=54;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=28 PL:GT:GQ        123,48,0:1/1:99
+chr4   82653801        .       A       G       4.11    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=29 PL:GT:GQ        34,9,0:1/1:63
+chr4   87130164        .       C       T       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=26 PL:GT:GQ        43,9,0:1/1:63
+chr4   87130176        .       G       A       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=26 PL:GT:GQ        43,9,0:1/1:63
+chr4   91459729        .       C       A       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr4   96130778        .       G       C       99      .       DP=19;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=45 PL:GT:GQ        211,57,0:1/1:99
+chr4   100709417       .       A       G       45.1    .       DP=16;AF1=0.505;CI95=0.5,0.5;DP4=12,0,4,0;MQ=24;PV4=1,1,1,1     PL:GT:GQ        75,0,17:0/1:20
+chr4   107276770       .       C       T       70      .       DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,6;MQ=31;PV4=1,1,1,1        PL:GT:GQ        100,0,97:0/1:98
+chr4   115327550       .       G       C       42      .       DP=67;AF1=1;CI95=1,1;DP4=0,1,0,66;MQ=35;PV4=1,3.2e-24,0.13,1    PL:GT:GQ        75,162,0:1/1:99
+chr4   136558502       .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr4   159572459       .       G       A       15.1    .       DP=126;AF1=0.5;CI95=0.5,0.5;DP4=0,69,0,57;MQ=39;PV4=1,4.1e-96,0.077,1   PL:GT:GQ        45,0,175:0/1:48
+chr4   174968484       .       G       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:GT:GQ        40,6,0:1/1:49
+chr4   175030633       .       T       C       14.3    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=29 PL:GT:GQ        47,18,0:1/1:90
+chr4   183410027       .       G       T       6.2     .       DP=31;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,2,0;MQ=45;PV4=1,0.035,1,0.21      PL:GT:GQ        35,0,28:0/1:30
+chr4   190907368       .       T       C       33.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:GT:GQ        66,12,0:1/1:72
+chr4   192175690       .       A       G       76.8    .       DP=7;AF1=0.95;CI95=0.5,1;DP4=0,3,0,4;MQ=35;PV4=1,1,1,1  PL:GT:GQ        105,0,0:1/1:10
+chr4   192673268       .       G       A       14.2    .       DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=22   PL:GT:GQ        47,27,0:1/1:99
+chr4   192943966       .       T       C       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:GT:GQ        73,6,0:1/1:49
+chr4   195460104       .       C       G       23.1    .       DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=19   PL:GT:GQ        56,24,0:1/1:96
+chr4   198277830       .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr5   170098  .       A       G       13      .       DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=30        PL:GT:GQ        44,6,0:1/1:49
+chr5   395814  .       T       C       4.77    .       DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=36;PV4=1,1,0.48,1      PL:GT:GQ        33,0,33:0/1:33
+chr5   414024  .       T       A       10.4    .       DP=17;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=20        PL:GT:GQ        42,9,0:1/1:63
+chr5   496767  .       T       C       13.9    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=36 PL:GT:GQ        45,6,0:1/1:49
+chr5   805676  .       C       G       45      .       DP=17;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=32 PL:GT:GQ        78,51,0:1/1:99
+chr5   1252896 .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr5   1418370 .       G       A       3.65    .       DP=8;AF1=0.7301;CI95=0.5,1;DP4=4,0,4,0;MQ=13;PV4=1,1,1,1        PL:GT:GQ        30,0,2:0/1:3
+chr5   1494911 .       G       C       62      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=46   PL:GT:GQ        95,24,0:1/1:96
+chr5   1494932 .       C       T       6.98    .       DP=8;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,2,0;MQ=46;PV4=1,0.1,0.077,1        PL:GT:GQ        36,0,31:0/1:33
+chr5   1506037 .       T       C       24.1    .       DP=24;AF1=1;CI95=0.5,1;DP4=11,0,13,0;MQ=16;PV4=1,1,1,1  PL:GT:GQ        55,5,0:1/1:46
+chr5   1509406 .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:GT:GQ        73,6,0:1/1:49
+chr5   1733649 .       A       G       99      .       DP=25;AF1=1;CI95=1,1;DP4=0,0,0,25;MQ=47 PL:GT:GQ        212,75,0:1/1:99
+chr5   1747304 .       A       G       12.3    .       DP=12;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=19 PL:GT:GQ        45,36,0:1/1:99
+chr5   1747308 .       C       A       44      .       DP=12;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=19 PL:GT:GQ        77,36,0:1/1:99
+chr5   3519783 .       C       T       21.1    .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=18   PL:GT:GQ        54,24,0:1/1:96
+chr5   4101593 .       A       G       69.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=43 PL:GT:GQ        102,12,0:1/1:72
+chr5   7204332 .       T       A       4.61    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=24 PL:GT:GQ        34,6,0:1/1:49
+chr5   11510398        .       A       C       34      .       DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,2,0;MQ=51;PV4=1,1,0,1      PL:GT:GQ        64,0,31:0/1:34
+chr5   15406720        .       T       C       6.02    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=51 PL:GT:GQ        36,6,0:1/1:49
+chr5   25152417        .       C       A       10.9    .       DP=28;AF1=0.5718;CI95=0.5,1;DP4=0,2,0,6;MQ=25;PV4=1,1,0.21,1    PL:GT:GQ        40,0,6:0/1:8
+chr5   39072637        .       A       G       35.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:GT:GQ        68,15,0:1/1:75
+chr5   46022699        .       G       A       44      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=35 PL:GT:GQ        76,9,0:1/1:63
+chr5   55664181        .       C       G       10.4    .       DP=8;AF1=0.9999;CI95=0.5,1;DP4=3,0,5,0;MQ=18;PV4=1,1,1,1        PL:GT:GQ        40,3,0:1/1:41
+chr5   56253386        .       T       C       50.1    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=36   PL:GT:GQ        83,21,0:1/1:84
+chr5   56253447        .       C       T       42.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:GT:GQ        75,12,0:1/1:72
+chr5   71950166        .       G       T       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=40 PL:GT:GQ        43,9,0:1/1:63
+chr5   72703090        .       C       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:GT:GQ        40,6,0:1/1:49
+chr5   73570280        .       G       T       5.45    .       DP=41;AF1=1;CI95=1,1;DP4=0,0,41,0;MQ=15 PL:GT:GQ        37,123,0:1/1:99
+chr5   73701762        .       G       T       40.8    .       DP=13;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43        PL:GT:GQ        72,6,0:1/1:49
+chr5   76956867        .       T       C       10.2    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:GT:GQ        41,6,0:1/1:49
+chr5   79097961        .       C       G       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=40 PL:GT:GQ        54,9,0:1/1:63
+chr5   87026167        .       T       C       22      .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        54,9,0:1/1:63
+chr5   97680525        .       T       C       3.27    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=23 PL:GT:GQ        33,12,0:1/1:72
+chr5   100674737       .       C       T       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr5   105389966       .       T       C       3.52    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=15 PL:GT:GQ        33,9,0:1/1:63
+chr5   109998341       .       A       C       12.7    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=35 PL:GT:GQ        45,12,0:1/1:72
+chr5   120629105       .       C       T       6.79    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        37,6,0:1/1:49
+chr5   128383954       .       C       T       23      .       DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=48;PV4=1,3.3e-07,1,1  PL:GT:GQ        53,0,98:0/1:56
+chr5   133925142       .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr5   135375404       .       T       C       11.8    .       DP=6;AF1=1;CI95=0.5,1;DP4=1,0,3,0;MQ=31;PV4=1,0.03,1,1  PL:GT:GQ        42,4,0:1/1:45
+chr5   136498281       .       T       G       13.9    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37 PL:GT:GQ        45,6,0:1/1:49
+chr5   136717285       .       A       G       82.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:GT:GQ        115,12,0:1/1:72
+chr5   136910734       .       G       A       62      .       DP=19;AF1=1;CI95=1,1;DP4=0,1,0,13;MQ=23;PV4=1,1,1,1     PL:GT:GQ        95,31,0:1/1:99
+chr5   141208149       .       C       G       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr5   148056348       .       C       A       37.1    .       DP=4;AF1=0.9966;CI95=0.5,1;DP4=1,0,2,0;MQ=38;PV4=1,1,1,1        PL:GT:GQ        66,1,0:1/1:23
+chr5   151941534       .       G       T       46.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=34 PL:GT:GQ        79,12,0:1/1:72
+chr5   159967229       .       G       C       22.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=35 PL:GT:GQ        55,12,0:1/1:72
+chr5   174024541       .       T       G       29.5    .       DP=3;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,2;MQ=32;PV4=1,1,1,1        PL:GT:GQ        59,2,0:1/1:37
+chr5   175525290       .       A       G       3.27    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=20 PL:GT:GQ        33,12,0:1/1:72
+chr5   175988954       .       A       C       14.2    .       DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=47;PV4=1,1,0.2,1      PL:GT:GQ        44,0,76:0/1:47
+chr5   176782226       .       T       C       9.31    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:GT:GQ        40,6,0:1/1:49
+chr5   179132834       .       C       G       99      .       DP=28;AF1=1;CI95=1,1;DP4=0,0,0,28;MQ=41 PL:GT:GQ        207,84,0:1/1:99
+chr5   180155809       .       G       C       3.01    .       DP=36;AF1=0.4997;CI95=0.5,0.5;DP4=25,0,9,0;MQ=35;PV4=1,1e-15,1,1        PL:GT:GQ        30,0,121:0/1:33
+chr5   181282819       .       T       G       38.3    .       DP=11;AF1=1;CI95=0.5,1;DP4=0,2,0,9;MQ=23;PV4=1,1,1,1    PL:GT:GQ        71,14,0:1/1:70
+chr5   182426125       .       G       C       29      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=26 PL:GT:GQ        61,9,0:1/1:63
+chr5   182443682       .       G       A       3.69    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=21 PL:GT:GQ        34,15,0:1/1:75
+chr5   183008993       .       C       T       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        54,9,0:1/1:63
+chr5   183312016       .       G       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:GT:GQ        40,6,0:1/1:49
+chr6_cox_hap1  519146  .       G       A       17.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=30 PL:GT:GQ        49,9,0:1/1:63
+chr6_cox_hap1  687497  .       A       G       33      .       DP=6;AF1=0.9999;CI95=0.5,1;DP4=2,0,4,0;MQ=35;PV4=1,0.0016,1,1   PL:GT:GQ        63,3,0:1/1:41
+chr6_qbl_hap2  120066  .       T       C       99      .       DP=12;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=37  PL:GT:GQ        139,27,0:1/1:99
+chr6   277954  .       C       T       53      .       DP=41;AF1=1;CI95=1,1;DP4=4,0,37,0;MQ=19;PV4=1,1,0.3,1   PL:GT:GQ        86,49,0:1/1:99
+chr6   593158  .       A       G       4.61    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32 PL:GT:GQ        34,6,0:1/1:49
+chr6   2865562 .       T       G       25      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=23   PL:GT:GQ        58,27,0:1/1:99
+chr6   3751403 .       G       A       42.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=32 PL:GT:GQ        75,15,0:1/1:75
+chr6   3884989 .       A       G       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=36 PL:GT:GQ        45,6,0:1/1:49
+chr6   4127278 .       A       T       13.9    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr6   5887783 .       C       G       99      .       DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=34   PL:GT:GQ        142,21,0:1/1:84
+chr6   5887811 .       C       T       55.1    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=34   PL:GT:GQ        88,21,0:1/1:84
+chr6   6937170 .       G       C       99      .       DP=47;AF1=1;CI95=1,1;DP4=0,0,0,47;MQ=28 PL:GT:GQ        157,141,0:1/1:99
+chr6   7262317 .       C       T       13.2    .       DP=50;AF1=0.5;CI95=0.5,0.5;DP4=21,0,9,0;MQ=36;PV4=1,4e-05,0.17,0.26     PL:GT:GQ        43,0,158:0/1:46
+chr6   7533214 .       A       G       10.4    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=26 PL:GT:GQ        42,9,0:1/1:63
+chr6   20979907        .       A       G       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=38 PL:GT:GQ        76,9,0:1/1:63
+chr6   22321632        .       A       G       41      .       DP=5;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,3,0;MQ=46;PV4=1,0.24,0.19,0.33     PL:GT:GQ        71,0,28:0/1:31
+chr6   25352296        .       G       A       7.8     .       DP=4;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,3;MQ=38;PV4=1,1,0.16,1   PL:GT:GQ        37,0,28:0/1:30
+chr6   26298040        .       T       A       34      .       DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,1,0.21,0.33        PL:GT:GQ        64,0,31:0/1:34
+chr6   33428755        .       G       A       70      .       DP=14;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=32  PL:GT:GQ        103,27,0:1/1:99
+chr6   39512099        .       G       A       55.1    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=50   PL:GT:GQ        88,21,0:1/1:84
+chr6   39961094        .       G       A       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr6   40452120        .       A       G       40.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:GT:GQ        72,6,0:1/1:49
+chr6   43204766        .       A       G       99      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=51   PL:GT:GQ        176,24,0:1/1:96
+chr6   52696512        .       C       T       70      .       DP=76;AF1=0.5;CI95=0.5,0.5;DP4=0,34,0,42;MQ=18;PV4=1,0.11,1,1   PL:GT:GQ        100,0,51:0/1:54
+chr6   53785550        .       A       G       99      .       DP=20;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=46 PL:GT:GQ        190,30,0:1/1:99
+chr6   53897484        .       C       T       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=36 PL:GT:GQ        45,6,0:1/1:49
+chr6   57038290        .       C       T       10.2    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=36 PL:GT:GQ        41,6,0:1/1:49
+chr6   62925087        .       G       C       35      .       DP=5;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,4,0;MQ=36;PV4=1,1,0.2,1    PL:GT:GQ        65,0,25:0/1:28
+chr6   62925094        .       T       C       25.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=36 PL:GT:GQ        58,15,0:1/1:75
+chr6   70834405        .       G       A       72.1    .       DP=13;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=29  PL:GT:GQ        105,21,0:1/1:84
+chr6   71026058        .       C       T       48.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=42 PL:GT:GQ        81,18,0:1/1:90
+chr6   74420752        .       T       C       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=39 PL:GT:GQ        76,9,0:1/1:63
+chr6   77498624        .       T       C       16.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=33 PL:GT:GQ        48,6,0:1/1:49
+chr6   80416836        .       T       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:GT:GQ        40,6,0:1/1:49
+chr6   113611590       .       A       G       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:GT:GQ        100,9,0:1/1:63
+chr6   119308431       .       T       C       38.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=40 PL:GT:GQ        71,12,0:1/1:72
+chr6   151758592       .       T       C       3.07    .       DP=17;AF1=0.9966;CI95=0.5,1;DP4=0,8,0,9;MQ=13;PV4=1,1,1,1       PL:GT:GQ        29,1,0:1/1:23
+chr6   151759358       .       A       G       99      .       DP=27;AF1=0.5;CI95=0.5,0.5;DP4=12,0,15,0;MQ=44;PV4=1,1,1,0.19   PL:GT:GQ        171,0,128:0/1:99
+chr6   154741755       .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:GT:GQ        40,6,0:1/1:49
+chr6   161061053       .       C       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=52 PL:GT:GQ        40,6,0:1/1:49
+chr6   161474189       .       C       T       6.02    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        36,6,0:1/1:49
+chr6   164304657       .       C       T       10.4    .       DP=63;AF1=0.5;CI95=0.5,0.5;DP4=0,29,0,19;MQ=22;PV4=1,7.7e-11,1,0.049    PL:GT:GQ        40,0,37:0/1:38
+chr6   164703105       .       T       C       99      .       DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=40 PL:GT:GQ        165,30,0:1/1:99
+chr6   167518328       .       A       G       78      .       DP=41;AF1=0.5;CI95=0.5,0.5;DP4=27,0,14,0;MQ=33;PV4=1,0.026,0.43,0.056   PL:GT:GQ        108,0,149:0/1:99
+chr6   169906323       .       G       A       41.8    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr6   171893912       .       G       A       69.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=33 PL:GT:GQ        102,15,0:1/1:75
+chr6   173631604       .       A       G       6.98    .       DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=37;PV4=1,0.069,1,1     PL:GT:GQ        36,0,34:0/1:35
+chr7   835856  .       C       T       27.5    .       DP=13;AF1=0.9998;CI95=0.5,1;DP4=4,0,6,0;MQ=23;PV4=1,0.46,1,1    PL:GT:GQ        57,2,0:1/1:37
+chr7   1046005 .       C       T       11.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=36 PL:GT:GQ        43,9,0:1/1:63
+chr7   1564339 .       C       T       71      .       DP=66;AF1=0.5;CI95=0.5,0.5;DP4=36,0,24,0;MQ=29;PV4=1,1,0.35,1   PL:GT:GQ        101,0,134:0/1:99
+chr7   1806266 .       C       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        73,6,0:1/1:49
+chr7   1936013 .       G       T       7.77    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=17 PL:GT:GQ        39,9,0:1/1:63
+chr7   2319532 .       C       A       4.11    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=14 PL:GT:GQ        34,9,0:1/1:63
+chr7   2682121 .       C       T       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=33 PL:GT:GQ        44,6,0:1/1:49
+chr7   3248116 .       T       C       36.5    .       DP=3;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,2;MQ=37;PV4=1,1,1,1        PL:GT:GQ        66,2,0:1/1:37
+chr7   3624766 .       C       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=41 PL:GT:GQ        40,6,0:1/1:49
+chr7   5291140 .       G       C       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37 PL:GT:GQ        45,6,0:1/1:49
+chr7   5314457 .       C       A       3.56    .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=18   PL:GT:GQ        34,24,0:1/1:95
+chr7   5595072 .       T       A       79      .       DP=13;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=31;PV4=1,1,1,1        PL:GT:GQ        109,0,57:0/1:60
+chr7   5646060 .       G       C       7.79    .       DP=11;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=10 PL:GT:GQ        40,30,0:1/1:99
+chr7   6056816 .       C       G       7.08    .       DP=6;AF1=0.9966;CI95=0.5,1;DP4=0,2,0,3;MQ=23;PV4=1,1,1,1        PL:GT:GQ        35,1,0:1/1:23
+chr7   6412641 .       C       T       40      .       DP=11;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=33 PL:GT:GQ        73,33,0:1/1:99
+chr7   6766874 .       A       G       34.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=43 PL:GT:GQ        67,15,0:1/1:75
+chr7   8482729 .       C       T       5.08    .       DP=16;AF1=0.8276;CI95=0.5,1;DP4=3,0,3,0;MQ=22;PV4=1,1,1,0.19    PL:GT:GQ        32,0,1:1/1:5
+chr7   9238362 .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr7   9687781 .       G       A       33      .       DP=29;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,12;MQ=48;PV4=1,6.5e-38,1,1        PL:GT:GQ        63,0,170:0/1:66
+chr7   9752803 .       A       T       14.2    .       DP=17;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=18  PL:GT:GQ        47,27,0:1/1:99
+chr7   10240910        .       T       C       45.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=35 PL:GT:GQ        78,12,0:1/1:72
+chr7   11046187        .       C       T       86.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=47 PL:GT:GQ        119,12,0:1/1:72
+chr7   11548207        .       C       G       14.6    .       DP=13;AF1=1;CI95=0.5,1;DP4=6,1,0,5;MQ=18;PV4=0.015,1,1,1        PL:GT:GQ        46,7,0:1/1:57
+chr7   11580317        .       C       T       42      .       DP=12;AF1=1;CI95=1,1;DP4=0,1,0,10;MQ=22;PV4=1,1,1,1     PL:GT:GQ        75,23,0:1/1:92
+chr7   11585384        .       G       A       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:GT:GQ        73,6,0:1/1:49
+chr7   13498356        .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:GT:GQ        73,6,0:1/1:49
+chr7   13500887        .       G       A       15.1    .       DP=11;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=22 PL:GT:GQ        48,30,0:1/1:99
+chr7   13827079        .       C       T       6.02    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        36,6,0:1/1:49
+chr7   14403976        .       T       G       59      .       DP=30;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=39  PL:GT:GQ        92,24,0:1/1:96
+chr7   14756588        .       A       G       44      .       DP=15;AF1=0.5;CI95=0.5,0.5;DP4=5,0,10,0;MQ=44;PV4=1,5.3e-18,1,1 PL:GT:GQ        74,0,70:0/1:72
+chr7   14756619        .       T       G       44      .       DP=15;AF1=0.5;CI95=0.5,0.5;DP4=5,0,10,0;MQ=44;PV4=1,6.4e-10,1,1 PL:GT:GQ        74,0,70:0/1:72
+chr7   36734598        .       A       C       11.1    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=40 PL:GT:GQ        42,6,0:1/1:49
+chr7   36734599        .       A       T       11.1    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=40 PL:GT:GQ        42,6,0:1/1:49
+chr7   36734603        .       G       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=40 PL:GT:GQ        40,6,0:1/1:49
+chr7   40634921        .       A       C       55      .       DP=13;AF1=1;CI95=1,1;DP4=0,0,13,0;MQ=39 PL:GT:GQ        88,39,0:1/1:99
+chr7   48271285        .       A       T       73      .       DP=15;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=25 PL:GT:GQ        106,30,0:1/1:99
+chr7   56264700        .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=51 PL:GT:GQ        40,6,0:1/1:49
+chr7   62326003        .       C       A       26.1    .       DP=35;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=28        PL:GT:GQ        59,18,0:1/1:90
+chr7   109468934       .       T       G       5.13    .       DP=10;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,2;MQ=39;PV4=1,0.031,1,1   PL:GT:GQ        33,2,0:1/1:37
+chr7   110208327       .       C       G       16.9    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:GT:GQ        48,6,0:1/1:49
+chr7   125654934       .       A       G       4.11    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=27 PL:GT:GQ        34,9,0:1/1:63
+chr7   125770209       .       A       C       32      .       DP=31;AF1=0.5;CI95=0.5,0.5;DP4=11,0,13,0;MQ=34;PV4=1,0.00017,0.16,0.22  PL:GT:GQ        62,0,105:0/1:65
+chr7   125770265       .       G       C       36      .       DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=48;PV4=1,0.0047,0.016,0.035   PL:GT:GQ        66,0,110:0/1:69
+chr7   126687042       .       A       G       21.1    .       DP=36;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=22  PL:GT:GQ        54,21,0:1/1:84
+chr7   132292897       .       G       T       99      .       DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=43   PL:GT:GQ        167,21,0:1/1:84
+chr7   132334562       .       A       C       23      .       DP=16;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=23 PL:GT:GQ        56,30,0:1/1:99
+chr7   132431838       .       C       T       13.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=1,0,4,0;MQ=23;PV4=1,1,1,1     PL:GT:GQ        44,5,0:1/1:46
+chr7   136324945       .       T       C       13.7    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=35 PL:GT:GQ        46,12,0:1/1:72
+chr7   136957634       .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:GT:GQ        40,6,0:1/1:49
+chr7   141746871       .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:GT:GQ        40,6,0:1/1:49
+chr7   146831870       .       C       T       4.77    .       DP=14;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,3,0;MQ=37;PV4=1,0.0029,0.28,1     PL:GT:GQ        33,0,28:0/1:30
+chr7   147142770       .       T       C       45      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=31 PL:GT:GQ        77,9,0:1/1:63
+chr7   147713906       .       C       T       4.77    .       DP=8;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,4,0;MQ=35;PV4=1,8.9e-06,0.48,0.27  PL:GT:GQ        33,0,29:0/1:31
+chr7   148742642       .       G       A       68      .       DP=14;AF1=0.5032;CI95=0.5,0.5;DP4=4,0,10,0;MQ=28;PV4=1,1,1,1    PL:GT:GQ        98,0,19:0/1:22
+chr7   148879148       .       C       T       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:GT:GQ        54,9,0:1/1:63
+chr7   149484407       .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:GT:GQ        73,6,0:1/1:49
+chr7   152444478       .       A       G       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=36 PL:GT:GQ        44,6,0:1/1:49
+chr7   154106613       .       C       T       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=51 PL:GT:GQ        100,9,0:1/1:63
+chr7   154776891       .       G       T       14.4    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=31 PL:GT:GQ        47,15,0:1/1:75
+chr7   155882061       .       A       C       29      .       DP=24;AF1=0.502;CI95=0.5,0.5;DP4=0,1,0,4;MQ=46;PV4=1,0.018,0.15,0.29    PL:GT:GQ        59,0,21:0/1:24
+chr7   155956844       .       G       C       23      .       DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=38;PV4=1,1,0.38,1     PL:GT:GQ        53,0,103:0/1:56
+chr7   156277694       .       G       A       62      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=46   PL:GT:GQ        95,24,0:1/1:96
+chr7   156720588       .       T       C       16.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=29 PL:GT:GQ        48,9,0:1/1:63
+chr7   156807649       .       T       C       3.01    .       DP=30;AF1=0.4997;CI95=0.5,0.5;DP4=0,4,0,3;MQ=43;PV4=1,0.16,0.15,1       PL:GT:GQ        30,0,72:0/1:33
+chr7   157331292       .       G       T       43.1    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=34   PL:GT:GQ        76,21,0:1/1:84
+chr7   157382957       .       T       C       33.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:GT:GQ        66,12,0:1/1:72
+chr8   556382  .       A       G       37.1    .       DP=5;AF1=0.9966;CI95=0.5,1;DP4=2,0,3,0;MQ=31;PV4=1,1,1,1        PL:GT:GQ        66,1,0:1/1:23
+chr8   1661673 .       T       C       9.31    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr8   7379751 .       C       A       6.24    .       DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=19   PL:GT:GQ        38,21,0:1/1:84
+chr8   8160505 .       A       T       68.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=35 PL:GT:GQ        101,12,0:1/1:72
+chr8   8160508 .       C       T       24.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=35 PL:GT:GQ        57,12,0:1/1:72
+chr8   16781011        .       A       G       55.5    .       DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=34 PL:GT:GQ        88,12,0:1/1:72
+chr8   18716499        .       A       T       20      .       DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,2;MQ=29;PV4=1,1,1,1        PL:GT:GQ        50,0,52:0/1:51
+chr8   23326483        .       A       G       60      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:GT:GQ        92,9,0:1/1:63
+chr8   25842819        .       T       A       12      .       DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47        PL:GT:GQ        43,6,0:1/1:49
+chr8   26300279        .       T       C       34      .       DP=44;AF1=1;CI95=1,1;DP4=0,0,41,0;MQ=21 PL:GT:GQ        67,123,0:1/1:99
+chr8   29673470        .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=41 PL:GT:GQ        73,6,0:1/1:49
+chr8   29673473        .       C       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=41 PL:GT:GQ        40,6,0:1/1:49
+chr8   31685466        .       C       T       34      .       DP=17;AF1=0.5;CI95=0.5,0.5;DP4=10,0,5,0;MQ=28;PV4=1,0.072,1,0.36        PL:GT:GQ        64,0,50:0/1:53
+chr8   37378739        .       C       T       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=34 PL:GT:GQ        45,6,0:1/1:49
+chr8   51325952        .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr8   59221963        .       G       A       16.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=29 PL:GT:GQ        48,9,0:1/1:63
+chr8   62764995        .       T       G       20      .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=32 PL:GT:GQ        52,9,0:1/1:63
+chr8   63157426        .       C       G       41.6    .       DP=22;AF1=1;CI95=0.5,1;DP4=0,7,0,15;MQ=19;PV4=1,1,1,0.25        PL:GT:GQ        74,11,0:1/1:66
+chr8   68710444        .       G       A       30      .       DP=5;AF1=0.6671;CI95=0.5,1;DP4=3,0,2,0;MQ=32;PV4=1,1,1,1        PL:GT:GQ        59,0,3:0/1:5
+chr8   76416560        .       G       A       89.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=46 PL:GT:GQ        122,12,0:1/1:72
+chr8   81425275        .       T       G       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:GT:GQ        100,9,0:1/1:63
+chr8   89842286        .       G       C       4.61    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=30 PL:GT:GQ        34,6,0:1/1:49
+chr8   100926281       .       G       A       38      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=41 PL:GT:GQ        70,9,0:1/1:63
+chr8   102746002       .       G       C       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr8   107850176       .       C       T       43.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=45 PL:GT:GQ        76,18,0:1/1:90
+chr8   109966441       .       T       C       27.3    .       DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=38 PL:GT:GQ        60,15,0:1/1:75
+chr8   118811716       .       G       T       99      .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:GT:GQ        155,18,0:1/1:90
+chr8   119440254       .       A       T       58.5    .       DP=5;AF1=0.8277;CI95=0.5,1;DP4=2,0,3,0;MQ=34;PV4=1,1,1,0.14     PL:GT:GQ        87,0,1:1/1:5
+chr8   121236024       .       G       A       39.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:GT:GQ        71,6,0:1/1:49
+chr8   125489079       .       C       T       13      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr8   128502549       .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:GT:GQ        73,6,0:1/1:49
+chr8   128502551       .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:GT:GQ        73,6,0:1/1:49
+chr8   130951113       .       G       A       4.61    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=19 PL:GT:GQ        34,6,0:1/1:49
+chr8   135307123       .       G       A       6.02    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:GT:GQ        36,6,0:1/1:49
+chr8   138814155       .       C       T       57.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=46 PL:GT:GQ        90,18,0:1/1:90
+chr8   140566111       .       A       G       18.1    .       DP=12;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=15 PL:GT:GQ        51,36,0:1/1:99
+chr8   141586480       .       T       G       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=40 PL:GT:GQ        76,9,0:1/1:63
+chr8   143376712       .       A       G       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr8   150662729       .       T       C       9.31    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        40,6,0:1/1:49
+chr8   150741294       .       A       G       25.1    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=34 PL:GT:GQ        58,18,0:1/1:90
+chr8   150975618       .       A       G       9.31    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        40,6,0:1/1:49
+chr8   151580103       .       T       C       6.02    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=20 PL:GT:GQ        36,6,0:1/1:49
+chr8   151634410       .       G       T       48      .       DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,5;MQ=39;PV4=1,0.072,1,1   PL:GT:GQ        78,0,125:0/1:81
+chr8   151709267       .       G       A       91.1    .       DP=8;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,7;MQ=40;PV4=1,1,0.28,0.37        PL:GT:GQ        121,0,16:0/1:19
+chr8   152636420       .       G       A       8.75    .       DP=3;AF1=0.9966;CI95=0.5,1;DP4=0,1,0,2;MQ=30;PV4=1,1,1,1        PL:GT:GQ        37,1,0:1/1:23
+chr8   152706967       .       G       A       3.01    .       DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=16 PL:GT:GQ        33,30,0:1/1:99
+chr8   152786522       .       T       C       80.1    .       DP=16;AF1=0.5102;CI95=0.5,0.5;DP4=0,4,0,12;MQ=31;PV4=1,0.25,1,1 PL:GT:GQ        110,0,14:0/1:17
+chr8   152863132       .       T       G       5.44    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=30 PL:GT:GQ        36,9,0:1/1:63
+chr9   23235268        .       C       T       12      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32 PL:GT:GQ        43,6,0:1/1:49
+chr9   26391176        .       T       C       15.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        47,6,0:1/1:49
+chr9   26868232        .       C       G       63      .       DP=20;AF1=0.5025;CI95=0.5,0.5;DP4=7,0,13,0;MQ=22;PV4=1,0.2,1,0.44       PL:GT:GQ        93,0,20:0/1:23
+chr9   34223668        .       C       T       22      .       DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,7;MQ=27;PV4=1,0.14,0.34,1  PL:GT:GQ        52,0,79:0/1:55
+chr9   39696645        .       G       A       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=41 PL:GT:GQ        43,9,0:1/1:63
+chr9   40654130        .       T       G       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        44,6,0:1/1:49
+chr9   41145321        .       T       G       46.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=33 PL:GT:GQ        79,12,0:1/1:72
+chr9   42273483        .       G       A       9.31    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr9   55633192        .       C       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr9   58705807        .       T       C       70      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=24 PL:GT:GQ        103,30,0:1/1:99
+chr9   61697149        .       C       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr9   63152790        .       A       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        40,6,0:1/1:49
+chr9   63703913        .       C       G       90.1    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=38   PL:GT:GQ        123,21,0:1/1:84
+chr9   65116068        .       T       C       70      .       DP=13;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=49 PL:GT:GQ        103,39,0:1/1:99
+chr9   71266598        .       C       A       3.98    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        33,6,0:1/1:49
+chr9   73188677        .       G       T       52      .       DP=294;AF1=1;CI95=1,1;DP4=44,0,245,0;MQ=33;PV4=1,0.28,0.0092,1  PL:GT:GQ        85,147,0:1/1:99
+chr9   78854179        .       G       T       22      .       DP=97;AF1=0.5;CI95=0.5,0.5;DP4=21,0,12,0;MQ=44;PV4=1,0.02,0.032,0.0033  PL:GT:GQ        52,0,158:0/1:55
+chr9   82964679        .       A       C       13.2    .       DP=19;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=36        PL:GT:GQ        45,9,0:1/1:63
+chr9   84124545        .       G       T       57      .       DP=11;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.024,1    PL:GT:GQ        87,0,59:0/1:62
+chr9   86552862        .       C       T       14.4    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=26 PL:GT:GQ        47,15,0:1/1:75
+chr9   87548941        .       A       G       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:GT:GQ        54,9,0:1/1:63
+chr9   89021101        .       G       A       89.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:GT:GQ        122,12,0:1/1:72
+chr9   90447825        .       G       A       9.31    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:GT:GQ        40,6,0:1/1:49
+chr9   92462035        .       C       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=36 PL:GT:GQ        40,6,0:1/1:49
+chr9   93077294        .       T       G       5.44    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=31 PL:GT:GQ        36,9,0:1/1:63
+chr9   93998137        .       G       A       68      .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:GT:GQ        100,9,0:1/1:63
+chr9   93998148        .       C       T       21.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=36 PL:GT:GQ        54,15,0:1/1:75
+chr9   95028964        .       C       A       99      .       DP=83;AF1=0.5;CI95=0.5,0.5;DP4=0,57,0,26;MQ=32;PV4=1,9.3e-08,1,0.092    PL:GT:GQ        134,0,120:0/1:99
+chr9   103829155       .       A       G       33      .       DP=96;AF1=1;CI95=1,1;DP4=0,0,96,0;MQ=16 PL:GT:GQ        66,255,0:1/1:99
+chr9   104981331       .       C       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:GT:GQ        73,6,0:1/1:49
+chr9   111070656       .       G       A       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr9   117395657       .       T       C       16.4    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=23 PL:GT:GQ        49,15,0:1/1:75
+chr9   117718907       .       A       G       46.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=29 PL:GT:GQ        79,18,0:1/1:90
+chr9   119149161       .       T       C       3.14    .       DP=65;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=22        PL:GT:GQ        33,15,0:1/1:75
+chr9   124528802       .       G       A       78      .       DP=23;AF1=1;CI95=1,1;DP4=0,0,13,0;MQ=25 PL:GT:GQ        111,39,0:1/1:99
+chr9   126707903       .       G       A       26      .       DP=37;AF1=0.5;CI95=0.5,0.5;DP4=0,21,0,8;MQ=46;PV4=1,2.6e-07,0.21,0.42   PL:GT:GQ        56,0,175:0/1:59
+chr9   128700686       .       C       G       33.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:GT:GQ        66,12,0:1/1:72
+chr9   129084077       .       G       A       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=41 PL:GT:GQ        43,9,0:1/1:63
+chr9   129116900       .       A       T       20      .       DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=30        PL:GT:GQ        52,9,0:1/1:63
+chr9   130290720       .       C       G       21.8    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:GT:GQ        53,6,0:1/1:49
+chr9   130306057       .       C       G       71      .       DP=14;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=28 PL:GT:GQ        104,42,0:1/1:99
+chr9   130528990       .       G       A       99      .       DP=31;AF1=1;CI95=1,1;DP4=0,0,31,0;MQ=27 PL:GT:GQ        174,93,0:1/1:99
+chr9   130529002       .       A       T       7.79    .       DP=30;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=15 PL:GT:GQ        40,33,0:1/1:99
+chr9   130639996       .       A       G       8.44    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=51 PL:GT:GQ        39,6,0:1/1:49
+chr9   130704890       .       A       G       3.27    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=26 PL:GT:GQ        33,12,0:1/1:72
+chr9   130708345       .       G       A       13.3    .       DP=11;AF1=0.9966;CI95=0.5,1;DP4=0,2,0,3;MQ=38;PV4=1,0.096,1,1   PL:GT:GQ        42,1,0:1/1:23
+chr9   131001601       .       T       A       3.98    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=31 PL:GT:GQ        33,6,0:1/1:49
+chr9   131058539       .       T       A       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:GT:GQ        44,6,0:1/1:49
+chr9   131808965       .       C       T       42      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=37   PL:GT:GQ        75,27,0:1/1:99
+chr9   132551867       .       C       T       17.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=25 PL:GT:GQ        49,9,0:1/1:63
+chr9   132685120       .       A       G       4.75    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=25 PL:GT:GQ        35,9,0:1/1:63
+chr9   133175050       .       A       G       18.1    .       DP=30;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=20 PL:GT:GQ        51,51,0:1/1:99
+chr9   133584978       .       A       G       99      .       DP=25;AF1=1;CI95=1,1;DP4=0,0,25,0;MQ=45 PL:GT:GQ        212,75,0:1/1:99
+chr9   133661895       .       A       G       99      .       DP=17;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=31 PL:GT:GQ        138,42,0:1/1:99
+chr9   133670376       .       T       C       68      .       DP=19;AF1=1;CI95=1,1;DP4=0,1,0,16;MQ=39;PV4=1,1.4e-20,1,1       PL:GT:GQ        101,39,0:1/1:99
+chr9   133843777       .       T       C       99      .       DP=9;AF1=0.5129;CI95=0.5,0.5;DP4=1,0,8,0;MQ=43;PV4=1,1,1,1      PL:GT:GQ        154,0,13:0/1:16
+chr9   134017265       .       G       C       3.27    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=13        PL:GT:GQ        33,12,0:1/1:72
+chr9   134105563       .       T       C       34.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=39 PL:GT:GQ        67,18,0:1/1:90
+chr9   134608906       .       C       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:GT:GQ        73,6,0:1/1:49
+chr9   134861929       .       T       A       9.49    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=30 PL:GT:GQ        41,9,0:1/1:63
+chr10  796662  .       A       G       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:GT:GQ        54,9,0:1/1:63
+chr10  1216716 .       T       A       18.6    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25 PL:GT:GQ        51,12,0:1/1:72
+chr10  1220781 .       G       A       21      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=18   PL:GT:GQ        54,27,0:1/1:99
+chr10  1225208 .       T       C       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:GT:GQ        100,9,0:1/1:63
+chr10  1727946 .       T       C       14.2    .       DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=27   PL:GT:GQ        47,21,0:1/1:84
+chr10  5986542 .       T       C       83      .       DP=93;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=39 PL:GT:GQ        116,30,0:1/1:99
+chr10  6436277 .       G       A       6.02    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        36,6,0:1/1:49
+chr10  7704114 .       C       A       35      .       DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,2,0,4;MQ=29;PV4=1,0.27,1,0.27  PL:GT:GQ        65,3,0:1/1:41
+chr10  10881734        .       A       G       9.52    .       DP=9;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=42;PV4=1,0.0026,0.14,1 PL:GT:GQ        39,0,91:0/1:42
+chr10  13099383        .       G       A       27.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:GT:GQ        60,12,0:1/1:72
+chr10  15764077        .       G       C       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=40 PL:GT:GQ        43,9,0:1/1:63
+chr10  18091502        .       T       C       47      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=38 PL:GT:GQ        79,9,0:1/1:63
+chr10  19645913        .       A       T       15.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:GT:GQ        47,6,0:1/1:49
+chr10  22845062        .       C       T       18.1    .       DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=18   PL:GT:GQ        51,21,0:1/1:84
+chr10  28282802        .       T       C       69      .       DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=42 PL:GT:GQ        102,36,0:1/1:99
+chr10  28496872        .       T       G       8.44    .       DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45        PL:GT:GQ        39,6,0:1/1:49
+chr10  32746793        .       G       A       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:GT:GQ        73,6,0:1/1:49
+chr10  41437604        .       T       G       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=39 PL:GT:GQ        43,9,0:1/1:63
+chr10  43051239        .       C       T       6.98    .       DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,2,0;MQ=40;PV4=1,0.33,0.33,1        PL:GT:GQ        36,0,31:0/1:33
+chr10  44455192        .       C       T       4.41    .       DP=6;AF1=0.8276;CI95=0.5,1;DP4=0,3,0,3;MQ=21;PV4=1,1,1,1        PL:GT:GQ        31,0,1:1/1:5
+chr10  48387336        .       A       G       13      .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr10  51561705        .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:GT:GQ        40,6,0:1/1:49
+chr10  51561712        .       C       G       39.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:GT:GQ        71,6,0:1/1:49
+chr10  55617954        .       G       A       8.44    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=31 PL:GT:GQ        39,6,0:1/1:49
+chr10  55718281        .       T       A       3.41    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32 PL:GT:GQ        32,6,0:1/1:49
+chr10  55888771        .       T       C       23.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:GT:GQ        56,12,0:1/1:72
+chr10  56025569        .       C       G       34.1    .       DP=3;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,2;MQ=39;PV4=1,1,1,1      PL:GT:GQ        64,0,16:0/1:19
+chr10  57384943        .       G       T       84      .       DP=29;AF1=0.5;CI95=0.5,0.5;DP4=16,0,13,0;MQ=26;PV4=1,0.015,1,1  PL:GT:GQ        114,0,110:0/1:99
+chr10  59873077        .       T       G       49      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=42   PL:GT:GQ        82,24,0:1/1:96
+chr10  61329572        .       C       T       15.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        47,6,0:1/1:49
+chr10  63790636        .       T       G       32.1    .       DP=19;AF1=1;CI95=1,1;DP4=1,0,10,0;MQ=28;PV4=1,0.14,1,1  PL:GT:GQ        65,22,0:1/1:88
+chr10  64466048        .       C       G       18.2    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=28 PL:GT:GQ        51,18,0:1/1:90
+chr10  65053440        .       G       T       99      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=39 PL:GT:GQ        153,30,0:1/1:99
+chr10  65407358        .       C       G       84.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=45 PL:GT:GQ        117,15,0:1/1:75
+chr10  65605291        .       G       A       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=51 PL:GT:GQ        73,6,0:1/1:49
+chr10  66104447        .       T       C       99      .       DP=47;AF1=0.5;CI95=0.5,0.5;DP4=0,25,0,21;MQ=34;PV4=1,1,0.15,1   PL:GT:GQ        136,0,162:0/1:99
+chr10  82160859        .       G       C       99      .       DP=17;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=36 PL:GT:GQ        153,39,0:1/1:99
+chr10  82198579        .       C       T       9.31    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        40,6,0:1/1:49
+chr10  87086290        .       A       G       4.13    .       DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=17   PL:GT:GQ        35,27,0:1/1:99
+chr10  89550621        .       T       G       74      .       DP=47;AF1=1;CI95=1,1;DP4=0,0,0,45;MQ=45 PL:GT:GQ        107,135,0:1/1:99
+chr10  92325046        .       G       A       42.3    .       DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=45        PL:GT:GQ        75,15,0:1/1:75
+chr10  94488050        .       A       G       5.46    .       DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=43;PV4=1,0.16,1,1      PL:GT:GQ        34,0,34:0/1:34
+chr10  95024815        .       C       T       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=36 PL:GT:GQ        45,6,0:1/1:49
+chr10  95466306        .       G       A       53      .       DP=7;AF1=0.6671;CI95=0.5,1;DP4=0,4,0,3;MQ=33;PV4=1,1,1,1        PL:GT:GQ        82,0,3:0/1:5
+chr10  100256777       .       T       G       3.83    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=23 PL:GT:GQ        34,12,0:1/1:72
+chr10  101510485       .       T       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr10  101530760       .       C       T       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr10  101879744       .       T       C       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=44 PL:GT:GQ        54,9,0:1/1:63
+chr10  102147276       .       G       C       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33 PL:GT:GQ        43,9,0:1/1:63
+chr10  102642248       .       T       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr10  107666616       .       T       C       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:GT:GQ        40,6,0:1/1:49
+chr10  108319945       .       C       G       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=29 PL:GT:GQ        43,9,0:1/1:63
+chr10  109734371       .       G       A       12.7    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=35 PL:GT:GQ        45,12,0:1/1:72
+chr10  112870604       .       C       T       46.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=36 PL:GT:GQ        79,12,0:1/1:72
+chr10  115304673       .       T       C       11.3    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=42 PL:GT:GQ        43,9,0:1/1:63
+chr10  119380588       .       G       A       14.2    .       DP=4;AF1=0.502;CI95=0.5,0.5;DP4=1,0,3,0;MQ=43;PV4=1,0.18,0.32,1 PL:GT:GQ        44,0,21:0/1:24
+chr10  123063756       .       C       T       14.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=23 PL:GT:GQ        46,9,0:1/1:63
+chr10  128424770       .       T       G       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=30 PL:GT:GQ        45,6,0:1/1:49
+chr10  131229204       .       T       C       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=40 PL:GT:GQ        76,9,0:1/1:63
+chr10  132420570       .       G       C       89.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:GT:GQ        122,12,0:1/1:72
+chr10  132528066       .       C       T       99      .       DP=19;AF1=1;CI95=1,1;DP4=0,0,19,0;MQ=42 PL:GT:GQ        213,57,0:1/1:99
+chr10  132644619       .       G       A       19.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=23 PL:GT:GQ        52,15,0:1/1:75
+chr10  132707581       .       G       C       9.11    .       DP=51;AF1=0.9998;CI95=0.5,1;DP4=1,0,2,0;MQ=25;PV4=1,1,1,1       PL:GT:GQ        38,2,0:1/1:37
+chr10  133026892       .       T       C       55.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=44 PL:GT:GQ        88,18,0:1/1:90
+chr11  768033  .       T       C       33.5    .       DP=4;AF1=0.8277;CI95=0.5,1;DP4=0,2,0,2;MQ=32;PV4=1,1,1,1        PL:GT:GQ        62,0,1:1/1:5
+chr11  768042  .       T       C       33.5    .       DP=6;AF1=0.8277;CI95=0.5,1;DP4=0,2,0,2;MQ=32;PV4=1,1,1,1        PL:GT:GQ        62,0,1:1/1:5
+chr11  874568  .       G       C       33.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=33 PL:GT:GQ        66,12,0:1/1:72
+chr11  1009210 .       T       C       4       .       DP=70;AF1=0.6241;CI95=0.5,1;DP4=0,3,0,8;MQ=24;PV4=1,1,0.5,1     PL:GT:GQ        31,0,4:0/1:6
+chr11  1016692 .       C       T       27      .       DP=39;AF1=1;CI95=1,1;DP4=0,0,0,38;MQ=22 PL:GT:GQ        60,114,0:1/1:99
+chr11  1034477 .       A       G       66      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=42 PL:GT:GQ        98,9,0:1/1:63
+chr11  1074037 .       G       A       4.13    .       DP=9;AF1=0.5001;CI95=0.5,0.5;DP4=4,0,5,0;MQ=24;PV4=1,1,0.43,1   PL:GT:GQ        32,0,30:0/1:31
+chr11  1556298 .       G       A       11.8    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=33 PL:GT:GQ        44,12,0:1/1:72
+chr11  1824777 .       T       C       27      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=28 PL:GT:GQ        60,30,0:1/1:99
+chr11  3395801 .       C       T       22      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        54,9,0:1/1:63
+chr11  3411901 .       G       A       4.75    .       DP=17;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=29        PL:GT:GQ        35,9,0:1/1:63
+chr11  3731606 .       A       C       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=39 PL:GT:GQ        43,9,0:1/1:63
+chr11  3783855 .       C       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:GT:GQ        40,6,0:1/1:49
+chr11  3967636 .       A       G       4.29    .       DP=20;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=24        PL:GT:GQ        35,15,0:1/1:75
+chr11  4385618 .       C       T       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=31 PL:GT:GQ        45,6,0:1/1:49
+chr11  4424365 .       T       A       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr11  5295586 .       C       T       3.01    .       DP=52;AF1=0.4997;CI95=0.5,0.5;DP4=33,0,10,0;MQ=29;PV4=1,0.0045,0.3,0.17 PL:GT:GQ        30,0,131:0/1:33
+chr11  6157144 .       C       G       45.1    .       DP=14;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=35  PL:GT:GQ        78,21,0:1/1:84
+chr11  6352044 .       C       T       18      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=31 PL:GT:GQ        50,9,0:1/1:63
+chr11  6767356 .       T       C       9.63    .       DP=3;AF1=0.9966;CI95=0.5,1;DP4=1,0,2,0;MQ=29;PV4=1,1,1,1        PL:GT:GQ        38,1,0:1/1:23
+chr11  6999404 .       G       C       21      .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37 PL:GT:GQ        53,9,0:1/1:63
+chr11  9120930 .       C       G       17.6    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25 PL:GT:GQ        50,12,0:1/1:72
+chr11  9373125 .       T       C       19.8    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        51,6,0:1/1:49
+chr11  9585101 .       C       T       67      .       DP=16;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=45 PL:GT:GQ        100,42,0:1/1:99
+chr11  10266192        .       A       C       14.3    .       DP=22;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=27        PL:GT:GQ        47,18,0:1/1:90
+chr11  10303263        .       T       C       8.64    .       DP=17;AF1=1;CI95=1,1;DP4=0,0,0,17;MQ=18 PL:GT:GQ        41,51,0:1/1:99
+chr11  10420170        .       T       C       35      .       DP=17;AF1=1;CI95=1,1;DP4=0,1,0,15;MQ=28;PV4=1,0.12,1,0.4        PL:GT:GQ        68,36,0:1/1:99
+chr11  10912169        .       G       A       99      .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:GT:GQ        155,18,0:1/1:90
+chr11  11315826        .       T       G       6.29    .       DP=27;AF1=1;CI95=1,1;DP4=0,0,0,6;MQ=19  PL:GT:GQ        38,18,0:1/1:90
+chr11  11603859        .       A       C       22      .       DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,6;MQ=34;PV4=1,9.5e-13,0.22,1       PL:GT:GQ        52,0,115:0/1:55
+chr11  11700034        .       C       T       33      .       DP=11;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=30  PL:GT:GQ        66,27,0:1/1:99
+chr11  11822758        .       G       A       15.1    .       DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,3;MQ=38;PV4=1,0.18,1,1     PL:GT:GQ        45,0,88:0/1:48
+chr11  11976636        .       C       T       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=24 PL:GT:GQ        54,9,0:1/1:63
+chr11  14380517        .       C       G       16.1    .       DP=10;AF1=0.5;CI95=0.5,0.5;DP4=5,0,5,0;MQ=48;PV4=1,2.1e-05,0.13,1       PL:GT:GQ        46,0,113:0/1:49
+chr11  14419212        .       A       G       91.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=38 PL:GT:GQ        124,18,0:1/1:90
+chr11  14846792        .       A       G       55      .       DP=11;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=19 PL:GT:GQ        88,33,0:1/1:99
+chr11  15494556        .       C       T       99      .       DP=38;AF1=0.5;CI95=0.5,0.5;DP4=22,0,14,0;MQ=34;PV4=1,0.0071,1,1 PL:GT:GQ        146,0,159:0/1:99
+chr11  16262879        .       A       C       16.1    .       DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,3;MQ=43;PV4=1,0.061,0.24,0.33    PL:GT:GQ        46,0,28:0/1:31
+chr11  21514947        .       T       C       24.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=41 PL:GT:GQ        57,12,0:1/1:72
+chr11  22532576        .       C       G       28      .       DP=17;AF1=1;CI95=1,1;DP4=0,0,0,17;MQ=17 PL:GT:GQ        61,51,0:1/1:99
+chr11  23529238        .       G       T       4.29    .       DP=13;AF1=0.5334;CI95=0.5,1;DP4=1,0,3,0;MQ=37;PV4=1,1,0.34,0.21 PL:GT:GQ        32,0,9:0/1:12
+chr11  24249554        .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:GT:GQ        73,6,0:1/1:49
+chr11  24853167        .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=51 PL:GT:GQ        73,6,0:1/1:49
+chr11  33353903        .       T       C       24.3    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=36 PL:GT:GQ        57,15,0:1/1:75
+chr11  35126569        .       T       C       24.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:GT:GQ        57,12,0:1/1:72
+chr11  35132248        .       C       T       18.6    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25 PL:GT:GQ        51,12,0:1/1:72
+chr11  35155482        .       T       C       68      .       DP=22;AF1=1;CI95=1,1;DP4=0,0,22,0;MQ=46 PL:GT:GQ        101,66,0:1/1:99
+chr11  52494088        .       T       C       99      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=37   PL:GT:GQ        140,27,0:1/1:99
+chr11  57899943        .       C       G       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr11  62261460        .       G       T       19.1    .       DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,5;MQ=27;PV4=1,1.1e-06,1,1  PL:GT:GQ        49,0,58:0/1:51
+chr11  67456049        .       C       T       39.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=19 PL:GT:GQ        72,18,0:1/1:90
+chr11  68509708        .       C       G       3.65    .       DP=9;AF1=0.7301;CI95=0.5,1;DP4=0,5,0,4;MQ=17;PV4=1,1,1,1        PL:GT:GQ        30,0,2:0/1:3
+chr11  70115115        .       T       A       99      .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:GT:GQ        140,15,0:1/1:75
+chr11  72643951        .       T       C       70      .       DP=23;AF1=1;CI95=1,1;DP4=0,0,22,0;MQ=39 PL:GT:GQ        103,66,0:1/1:99
+chr11  72647930        .       G       A       36      .       DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,3;MQ=41;PV4=1,1,0.3,1    PL:GT:GQ        66,0,28:0/1:31
+chr11  73330148        .       C       T       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr11  81720893        .       A       G       5.83    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=19 PL:GT:GQ        37,12,0:1/1:72
+chr11  83813797        .       A       G       23.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:GT:GQ        56,12,0:1/1:72
+chr11  85949488        .       C       A       54      .       DP=17;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=37 PL:GT:GQ        87,42,0:1/1:99
+chr11  87634829        .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=51 PL:GT:GQ        40,6,0:1/1:49
+chr11  90913093        .       A       T       35.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:GT:GQ        67,6,0:1/1:49
+chr11  93793348        .       G       A       99      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=31   PL:GT:GQ        139,24,0:1/1:96
+chr11  100802294       .       T       C       16.6    .       DP=21;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=35        PL:GT:GQ        49,12,0:1/1:72
+chr11  107455449       .       C       T       8.44    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=26 PL:GT:GQ        39,6,0:1/1:49
+chr11  111344355       .       A       G       69.5    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=43 PL:GT:GQ        102,12,0:1/1:72
+chr11  111611115       .       C       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr11  113050466       .       G       C       6.02    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=30 PL:GT:GQ        36,6,0:1/1:49
+chr11  114332544       .       T       C       3.54    .       DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,5;MQ=37;PV4=1,0.32,0.13,1       PL:GT:GQ        31,0,37:0/1:33
+chr11  114332549       .       G       A       3.54    .       DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=0,9,0,8;MQ=36;PV4=1,3.1e-10,0.088,1   PL:GT:GQ        31,0,127:0/1:34
+chr11  114843578       .       G       C       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:GT:GQ        73,6,0:1/1:49
+chr11  115580279       .       A       G       99      .       DP=15;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=48 PL:GT:GQ        190,45,0:1/1:99
+chr11  116434328       .       G       A       17.6    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25 PL:GT:GQ        50,12,0:1/1:72
+chr11  125914161       .       A       G       20.8    .       DP=7;AF1=0.95;CI95=0.5,1;DP4=3,0,4,0;MQ=38;PV4=1,0.074,1,1      PL:GT:GQ        49,0,0:1/1:10
+chr11  125917089       .       C       T       12.3    .       DP=41;AF1=0.5;CI95=0.5,0.5;DP4=0,28,0,12;MQ=44;PV4=1,4.7e-25,1,1        PL:GT:GQ        42,0,167:0/1:45
+chr11  127194100       .       A       G       60      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49   PL:GT:GQ        93,24,0:1/1:96
+chr12  70856   .       G       A       27.5    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:GT:GQ        60,12,0:1/1:72
+chr12  153693  .       T       C       52.3    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=38 PL:GT:GQ        85,15,0:1/1:75
+chr12  924547  .       C       G       37.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:GT:GQ        69,6,0:1/1:49
+chr12  1555916 .       G       A       7.18    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=23 PL:GT:GQ        39,15,0:1/1:75
+chr12  1919860 .       G       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr12  2283756 .       G       A       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=34 PL:GT:GQ        45,6,0:1/1:49
+chr12  2805983 .       G       C       12.7    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=35 PL:GT:GQ        45,12,0:1/1:72
+chr12  6088203 .       T       C       72.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=37 PL:GT:GQ        105,15,0:1/1:75
+chr12  7099460 .       G       C       10.8    .       DP=6;AF1=0.8277;CI95=0.5,1;DP4=3,0,3,0;MQ=26;PV4=1,0.027,1,1    PL:GT:GQ        39,0,1:1/1:5
+chr12  7099464 .       G       A       13.3    .       DP=6;AF1=0.9966;CI95=0.5,1;DP4=2,0,3,0;MQ=28;PV4=1,0.16,1,1     PL:GT:GQ        42,1,0:1/1:23
+chr12  7198516 .       T       G       4.61    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        34,6,0:1/1:49
+chr12  23331895        .       C       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr12  28209020        .       T       G       14.4    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=31 PL:GT:GQ        47,15,0:1/1:75
+chr12  30074073        .       C       T       32.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        64,6,0:1/1:49
+chr12  30563452        .       T       C       25      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:GT:GQ        57,9,0:1/1:63
+chr12  30563453        .       A       G       25      .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:GT:GQ        57,9,0:1/1:63
+chr12  30563464        .       C       A       78.8    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,2,0,5;MQ=34;PV4=1,0.29,1,1  PL:GT:GQ        110,6,0:1/1:49
+chr12  31505085        .       G       A       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr12  34041336        .       G       A       5.46    .       DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=36;PV4=1,1,0.48,0.21   PL:GT:GQ        34,0,34:0/1:34
+chr12  49003648        .       C       G       42      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=39   PL:GT:GQ        75,24,0:1/1:96
+chr12  51280690        .       G       A       69      .       DP=98;AF1=0.5;CI95=0.5,0.5;DP4=13,0,18,0;MQ=45;PV4=1,1,0.051,1  PL:GT:GQ        99,0,84:0/1:87
+chr12  69206633        .       T       C       17.1    .       DP=12;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=17 PL:GT:GQ        50,33,0:1/1:99
+chr12  80417253        .       T       C       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:GT:GQ        73,6,0:1/1:49
+chr12  86633033        .       C       T       34      .       DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,2;MQ=43;PV4=1,1,0.33,1   PL:GT:GQ        64,0,31:0/1:34
+chr12  98097274        .       C       T       47.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=31 PL:GT:GQ        80,15,0:1/1:75
+chr12  105269319       .       C       T       19      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=26 PL:GT:GQ        51,9,0:1/1:63
+chr12  109053425       .       G       A       9.53    .       DP=8;AF1=0.5012;CI95=0.5,0.5;DP4=2,0,6,0;MQ=25;PV4=1,1,0.19,1   PL:GT:GQ        39,0,23:0/1:26
+chr12  111904540       .       A       G       3.41    .       DP=65;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=31        PL:GT:GQ        32,6,0:1/1:49
+chr12  115038686       .       T       C       15.2    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=27   PL:GT:GQ        48,21,0:1/1:84
+chr12  115039419       .       A       G       4.11    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=30 PL:GT:GQ        34,9,0:1/1:63
+chr12  115103890       .       G       A       66      .       DP=39;AF1=1;CI95=1,1;DP4=0,0,0,38;MQ=49 PL:GT:GQ        99,114,0:1/1:99
+chr12  115833830       .       G       A       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        100,9,0:1/1:63
+chr12  116361873       .       T       G       6.34    .       DP=5;AF1=0.7302;CI95=0.5,1;DP4=0,2,0,2;MQ=23;PV4=1,1,1,1        PL:GT:GQ        34,0,2:0/1:3
+chr12  123583527       .       G       A       14.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=25 PL:GT:GQ        46,9,0:1/1:63
+chr12  124115330       .       A       G       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=38 PL:GT:GQ        76,9,0:1/1:63
+chr12  125062296       .       G       A       41.8    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:GT:GQ        73,6,0:1/1:49
+chr12  126718106       .       A       G       8.76    .       DP=50;AF1=0.5163;CI95=0.5,1;DP4=2,0,6,0;MQ=26;PV4=1,0.33,0.37,1 PL:GT:GQ        38,0,12:0/1:15
+chr12  133348311       .       G       A       24      .       DP=18;AF1=0.5;CI95=0.5,0.5;DP4=14,0,3,0;MQ=35;PV4=1,1,1,1       PL:GT:GQ        54,0,118:0/1:57
+chr12  134494475       .       C       T       28      .       DP=18;AF1=0.6671;CI95=0.5,1;DP4=8,0,10,0;MQ=18;PV4=1,1,1,1      PL:GT:GQ        57,0,3:0/1:5
+chr12  134831761       .       C       T       41.3    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=27        PL:GT:GQ        74,15,0:1/1:75
+chr12  134992770       .       A       C,T     84      .       DP=47;AF1=1;CI95=1,1;DP4=0,0,26,0;MQ=29 PL:GT:GQ        117,72,114,0,44,114:1/1:99
+chr12  135261117       .       G       A       49.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=46 PL:GT:GQ        82,18,0:1/1:90
+chr12  135261144       .       A       G       99      .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=46 PL:GT:GQ        155,18,0:1/1:90
+chr12  135460302       .       G       A       99      .       DP=25;AF1=1;CI95=1,1;DP4=0,0,23,0;MQ=40 PL:GT:GQ        198,69,0:1/1:99
+chr12  135463758       .       A       G       83      .       DP=16;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=26 PL:GT:GQ        116,48,0:1/1:99
+chr12  135523325       .       G       A       99      .       DP=23;AF1=1;CI95=1,1;DP4=0,0,22,0;MQ=26 PL:GT:GQ        136,66,0:1/1:99
+chr12  135782401       .       T       C       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr12  135795472       .       G       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        40,6,0:1/1:49
+chr13  18040027        .       G       C       42      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=33 PL:GT:GQ        74,9,0:1/1:63
+chr13  19494625        .       G       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:GT:GQ        73,6,0:1/1:49
+chr13  20121126        .       A       G       15.1    .       DP=36;AF1=0.5;CI95=0.5,0.5;DP4=25,0,9,0;MQ=36;PV4=1,1,0.13,1    PL:GT:GQ        45,0,153:0/1:48
+chr13  21536703        .       A       G       9.31    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr13  23160035        .       G       T       3.98    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=36 PL:GT:GQ        33,6,0:1/1:49
+chr13  23476554        .       C       A       6.79    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=52 PL:GT:GQ        37,6,0:1/1:49
+chr13  26632967        .       C       G       32      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=34   PL:GT:GQ        65,27,0:1/1:99
+chr13  26790010        .       T       C       89.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=35 PL:GT:GQ        122,15,0:1/1:75
+chr13  36083571        .       T       C       43      .       DP=84;AF1=1;CI95=1,1;DP4=1,0,37,0;MQ=16;PV4=1,1,1,0.3   PL:GT:GQ        76,99,0:1/1:99
+chr13  44432419        .       C       T       3.58    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=19   PL:GT:GQ        34,21,0:1/1:84
+chr13  46592359        .       T       C       16.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        48,6,0:1/1:49
+chr13  52764657        .       A       T       3.14    .       DP=32;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=22        PL:GT:GQ        33,15,0:1/1:75
+chr13  53084193        .       C       T       9.11    .       DP=3;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,2;MQ=29;PV4=1,1,1,1        PL:GT:GQ        38,2,0:1/1:37
+chr13  57763228        .       C       T       45      .       DP=555;AF1=1;CI95=1,1;DP4=2,0,21,0;MQ=23;PV4=1,0.00021,1,0.3    PL:GT:GQ        78,45,0:1/1:99
+chr13  73857921        .       G       C       31      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:GT:GQ        63,9,0:1/1:63
+chr13  76718001        .       G       A       59      .       DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,3,0;MQ=45;PV4=1,1,0.12,1   PL:GT:GQ        89,0,28:0/1:31
+chr13  100912695       .       A       T       23      .       DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,6;MQ=31;PV4=1,0.029,1,0.35        PL:GT:GQ        53,0,103:0/1:56
+chr13  101332001       .       G       C       21      .       DP=23;AF1=1;CI95=1,1;DP4=0,0,23,0;MQ=21 PL:GT:GQ        54,69,0:1/1:99
+chr13  102637334       .       C       T       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        100,9,0:1/1:63
+chr13  102895627       .       C       T       63      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=48   PL:GT:GQ        96,27,0:1/1:99
+chr13  103830322       .       T       C       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:GT:GQ        73,6,0:1/1:49
+chr13  112842448       .       G       A       39      .       DP=18;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=27  PL:GT:GQ        72,27,0:1/1:99
+chr13  113310291       .       C       T       33.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:GT:GQ        66,12,0:1/1:72
+chr13  114775162       .       A       G       80      .       DP=17;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=21 PL:GT:GQ        113,51,0:1/1:99
+chr13  115267482       .       A       G       16.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=29 PL:GT:GQ        48,9,0:1/1:63
+chr13  116068676       .       C       T       3.83    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=27 PL:GT:GQ        34,12,0:1/1:72
+chr13  116455918       .       A       G       33      .       DP=29;AF1=0.5;CI95=0.5,0.5;DP4=13,0,15,0;MQ=42;PV4=1,1.8e-20,0.3,1      PL:GT:GQ        63,0,146:0/1:66
+chr13  116765012       .       G       A       30.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        62,6,0:1/1:49
+chr13  116779773       .       C       T       17.1    .       DP=38;AF1=0.5;CI95=0.5,0.5;DP4=27,0,11,0;MQ=24;PV4=1,4.5e-35,1,1        PL:GT:GQ        47,0,106:0/1:50
+chr13  116779791       .       C       T       57      .       DP=38;AF1=0.5;CI95=0.5,0.5;DP4=24,0,14,0;MQ=24;PV4=1,1,1,1      PL:GT:GQ        87,0,103:0/1:90
+chr14  20159250        .       C       T       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=39 PL:GT:GQ        43,9,0:1/1:63
+chr14  23510676        .       T       C       52      .       DP=22;AF1=1;CI95=1,1;DP4=0,0,22,0;MQ=32 PL:GT:GQ        85,66,0:1/1:99
+chr14  24735256        .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr14  29525577        .       G       A       21      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=16  PL:GT:GQ        54,27,0:1/1:99
+chr14  36186389        .       C       T       6.79    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=20 PL:GT:GQ        37,6,0:1/1:49
+chr14  36186394        .       A       G       6.79    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=20 PL:GT:GQ        37,6,0:1/1:49
+chr14  37440609        .       A       G       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=33 PL:GT:GQ        44,6,0:1/1:49
+chr14  40432807        .       A       G       18.6    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=23 PL:GT:GQ        51,12,0:1/1:72
+chr14  59466268        .       T       C       15.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25 PL:GT:GQ        47,9,0:1/1:63
+chr14  61368162        .       G       T       7.18    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=17 PL:GT:GQ        39,15,0:1/1:75
+chr14  65152922        .       G       A       92      .       DP=33;AF1=0.5;CI95=0.5,0.5;DP4=0,18,0,15;MQ=36;PV4=1,0.059,0.35,1       PL:GT:GQ        122,0,144:0/1:99
+chr14  69749148        .       G       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=25 PL:GT:GQ        40,6,0:1/1:49
+chr14  74877658        .       C       T       45      .       DP=48;AF1=1;CI95=1,1;DP4=0,1,0,12;MQ=36;PV4=1,0.02,1,0.39       PL:GT:GQ        78,28,0:1/1:99
+chr14  75546678        .       C       T       19.2    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=17 PL:GT:GQ        52,18,0:1/1:90
+chr14  76439185        .       T       C       67.1    .       DP=7;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,6;MQ=33;PV4=1,1,0.056,0.29        PL:GT:GQ        97,0,17:0/1:20
+chr14  77313295        .       T       A       99      .       DP=12;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=48 PL:GT:GQ        191,30,0:1/1:99
+chr14  77673422        .       G       A       11.5    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=24 PL:GT:GQ        44,18,0:1/1:90
+chr14  78646125        .       T       C       99      .       DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=40   PL:GT:GQ        153,24,0:1/1:96
+chr14  91702449        .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        40,6,0:1/1:49
+chr14  91769842        .       G       A       63      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:GT:GQ        95,9,0:1/1:63
+chr14  91775899        .       C       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:GT:GQ        73,6,0:1/1:49
+chr14  91775924        .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:GT:GQ        40,6,0:1/1:49
+chr14  93482918        .       A       C       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:GT:GQ        100,9,0:1/1:63
+chr14  93665819        .       C       T       75      .       DP=7;AF1=0.5002;CI95=0.5,0.5;DP4=0,3,0,4;MQ=42;PV4=1,1,1,1      PL:GT:GQ        105,0,31:0/1:34
+chr14  95422276        .       A       G       55.1    .       DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=45   PL:GT:GQ        88,21,0:1/1:84
+chr14  95731986        .       C       T       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        100,9,0:1/1:63
+chr14  96045464        .       A       G       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=33 PL:GT:GQ        44,6,0:1/1:49
+chr14  97172020        .       C       T       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=51 PL:GT:GQ        100,9,0:1/1:63
+chr14  100515480       .       A       G       6.98    .       DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,0.14,0.085,0.33    PL:GT:GQ        36,0,30:0/1:32
+chr14  100770214       .       A       T       8.69    .       DP=20;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=16  PL:GT:GQ        41,21,0:1/1:84
+chr14  101258303       .       G       A       82      .       DP=15;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=26 PL:GT:GQ        115,45,0:1/1:99
+chr14  101701492       .       C       G       66      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=49 PL:GT:GQ        99,30,0:1/1:99
+chr14  102113772       .       T       C       3.98    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=30 PL:GT:GQ        33,6,0:1/1:49
+chr14  102751431       .       A       C       36.5    .       DP=3;AF1=0.9998;CI95=0.5,1;DP4=1,0,2,0;MQ=35;PV4=1,1,1,1        PL:GT:GQ        66,2,0:1/1:37
+chr14  103708033       .       A       G       99      .       DP=13;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=27 PL:GT:GQ        141,36,0:1/1:99
+chr14  104744582       .       G       A       3.52    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=25 PL:GT:GQ        33,9,0:1/1:63
+chr14  105989100       .       C       T       3.14    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=23 PL:GT:GQ        33,15,0:1/1:75
+chr14  105989162       .       C       T       3.65    .       DP=12;AF1=0.7301;CI95=0.5,1;DP4=0,6,0,6;MQ=15;PV4=1,1,1,1       PL:GT:GQ        30,0,2:0/1:3
+chr14  106234810       .       G       A       25.3    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=39 PL:GT:GQ        58,15,0:1/1:75
+chr14  106995572       .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr14  107283057       .       T       C       5.5     .       DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=20   PL:GT:GQ        37,21,0:1/1:84
+chr14  107285319       .       T       C       33      .       DP=36;AF1=1;CI95=1,1;DP4=0,0,0,35;MQ=22 PL:GT:GQ        66,105,0:1/1:99
+chr14  107640449       .       A       G       11.8    .       DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=36 PL:GT:GQ        44,12,0:1/1:72
+chr15  20082092        .       T       G       18.3    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=24        PL:GT:GQ        51,15,0:1/1:75
+chr15  22955884        .       T       C       67      .       DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=48 PL:GT:GQ        100,36,0:1/1:99
+chr15  22971987        .       A       G       5.29    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=22 PL:GT:GQ        35,6,0:1/1:49
+chr15  23233324        .       C       A       47      .       DP=16;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=31 PL:GT:GQ        80,42,0:1/1:99
+chr15  25175286        .       C       T       36.5    .       DP=3;AF1=0.9998;CI95=0.5,1;DP4=1,0,2,0;MQ=42;PV4=1,1,1,1        PL:GT:GQ        66,2,0:1/1:37
+chr15  25385709        .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:GT:GQ        40,6,0:1/1:49
+chr15  27372396        .       A       G       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=40 PL:GT:GQ        76,9,0:1/1:63
+chr15  35998093        .       C       T       9.53    .       DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=17   PL:GT:GQ        42,27,0:1/1:99
+chr15  36716538        .       C       G       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=36 PL:GT:GQ        45,6,0:1/1:49
+chr15  36793360        .       G       T       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=42 PL:GT:GQ        76,9,0:1/1:63
+chr15  53783097        .       A       G       10.5    .       DP=31;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=16  PL:GT:GQ        43,21,0:1/1:84
+chr15  54180175        .       C       T       10.4    .       DP=7;AF1=0.5001;CI95=0.5,0.5;DP4=4,0,3,0;MQ=27;PV4=1,1.2e-05,1,1        PL:GT:GQ        40,0,32:0/1:34
+chr15  54939306        .       C       T       99      .       DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,18,0,16;MQ=49;PV4=1,1,0.18,1   PL:GT:GQ        172,0,181:0/1:99
+chr15  59377916        .       C       T       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:GT:GQ        73,6,0:1/1:49
+chr15  59685961        .       G       C       68      .       DP=11;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=36 PL:GT:GQ        101,33,0:1/1:99
+chr15  60306384        .       A       G       18.6    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25 PL:GT:GQ        51,12,0:1/1:72
+chr15  60345642        .       G       C       14.9    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        46,6,0:1/1:49
+chr15  60367387        .       G       A       13.2    .       DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=3,0,3,0;MQ=34;PV4=1,0.098,0.24,1       PL:GT:GQ        43,0,35:0/1:37
+chr15  60367446        .       C       T       44      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=41 PL:GT:GQ        76,9,0:1/1:63
+chr15  61763755        .       G       A       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:GT:GQ        100,9,0:1/1:63
+chr15  61831362        .       C       G       11.3    .       DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=30;PV4=1,0.00077,0.47,1        PL:GT:GQ        41,0,42:0/1:41
+chr15  63978880        .       G       C       60      .       DP=6;AF1=0.9999;CI95=0.5,1;DP4=2,0,4,0;MQ=35;PV4=1,1,1,1        PL:GT:GQ        90,3,0:1/1:41
+chr15  64342445        .       A       G       12.2    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=18 PL:GT:GQ        44,9,0:1/1:63
+chr15  65424859        .       T       C       11.3    .       DP=10;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=21 PL:GT:GQ        44,30,0:1/1:99
+chr15  65603698        .       C       T       60      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        92,9,0:1/1:63
+chr15  67005078        .       G       A       13.9    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr15  71133512        .       G       C       22.3    .       DP=19;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=25        PL:GT:GQ        55,15,0:1/1:75
+chr15  72619009        .       A       G       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:GT:GQ        54,9,0:1/1:63
+chr15  73272688        .       C       T       70.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=39 PL:GT:GQ        103,15,0:1/1:75
+chr15  73699335        .       T       A       99      .       DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=45   PL:GT:GQ        175,27,0:1/1:99
+chr15  74513352        .       C       T       99      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=37 PL:GT:GQ        139,30,0:1/1:99
+chr15  75540536        .       G       A       9.31    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:GT:GQ        40,6,0:1/1:49
+chr15  75822537        .       C       A       17.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=23 PL:GT:GQ        50,15,0:1/1:75
+chr15  78554005        .       T       C       12      .       DP=18;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46        PL:GT:GQ        43,6,0:1/1:49
+chr15  80089369        .       G       A       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=28 PL:GT:GQ        40,6,0:1/1:49
+chr15  83089149        .       C       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=33 PL:GT:GQ        40,6,0:1/1:49
+chr15  86839307        .       T       C       90.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=43 PL:GT:GQ        123,15,0:1/1:75
+chr15  89836258        .       T       C       99      .       DP=10;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=39  PL:GT:GQ        141,24,0:1/1:96
+chr15  89837706        .       G       A       4.13    .       DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,4,0,4;MQ=30;PV4=1,1,0.25,1   PL:GT:GQ        32,0,59:0/1:35
+chr15  89857648        .       T       C       99      .       DP=27;AF1=0.5;CI95=0.5,0.5;DP4=8,0,8,0;MQ=40;PV4=1,1,0.3,1      PL:GT:GQ        133,0,130:0/1:99
+chr15  89864228        .       A       C       32      .       DP=4;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,2,0;MQ=42;PV4=1,1,1,1      PL:GT:GQ        62,0,31:0/1:34
+chr15  91261235        .       G       A       7.8     .       DP=4;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,2,0;MQ=44;PV4=1,1,0.32,1   PL:GT:GQ        37,0,30:0/1:32
+chr16  256990  .       A       C       10.4    .       DP=16;AF1=0.5008;CI95=0.5,0.5;DP4=4,0,3,0;MQ=23;PV4=1,0.34,1,1  PL:GT:GQ        40,0,25:0/1:28
+chr16  260794  .       T       C       3.01    .       DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=13,0,2,0;MQ=24;PV4=1,1,1,1    PL:GT:GQ        30,0,32:0/1:31
+chr16  419905  .       A       G       7.9     .       DP=5;AF1=0.9966;CI95=0.5,1;DP4=0,2,0,3;MQ=22;PV4=1,1,1,1        PL:GT:GQ        36,1,0:1/1:23
+chr16  824086  .       T       C       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:GT:GQ        54,9,0:1/1:63
+chr16  1085063 .       C       T       52      .       DP=12;AF1=0.5;CI95=0.5,0.5;DP4=6,0,6,0;MQ=42;PV4=1,1,0.014,1    PL:GT:GQ        82,0,128:0/1:85
+chr16  1221305 .       T       C       54      .       DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=40;PV4=1,1,1,1 PL:GT:GQ        84,0,60:0/1:63
+chr16  1411728 .       A       G       32.3    .       DP=11;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=35        PL:GT:GQ        65,15,0:1/1:75
+chr16  1443197 .       C       G       64      .       DP=26;AF1=1;CI95=1,1;DP4=0,0,25,0;MQ=36 PL:GT:GQ        97,75,0:1/1:99
+chr16  1478746 .       A       T       32      .       DP=20;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=28  PL:GT:GQ        65,24,0:1/1:96
+chr16  1514438 .       A       C       45      .       DP=49;AF1=1;CI95=1,1;DP4=0,0,48,0;MQ=26 PL:GT:GQ        78,144,0:1/1:99
+chr16  1601989 .       T       C       99      .       DP=13;AF1=1;CI95=1,1;DP4=0,0,13,0;MQ=29 PL:GT:GQ        133,39,0:1/1:99
+chr16  2043883 .       C       T       30      .       DP=33;AF1=1;CI95=1,1;DP4=0,0,0,33;MQ=14 PL:GT:GQ        63,99,0:1/1:99
+chr16  2137470 .       A       C       39      .       DP=38;AF1=0.5016;CI95=0.5,0.5;DP4=4,0,6,0;MQ=34;PV4=1,0.02,1,1  PL:GT:GQ        69,0,22:0/1:25
+chr16  2537260 .       A       G       99      .       DP=11;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=40 PL:GT:GQ        177,33,0:1/1:99
+chr16  2564737 .       T       C       99      .       DP=25;AF1=1;CI95=1,1;DP4=0,0,0,22;MQ=41 PL:GT:GQ        199,66,0:1/1:99
+chr16  2612605 .       A       T       62.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=28 PL:GT:GQ        95,15,0:1/1:75
+chr16  2704518 .       G       A       41      .       DP=48;AF1=0.5;CI95=0.5,0.5;DP4=0,17,0,12;MQ=48;PV4=1,1.9e-23,0.24,0.034 PL:GT:GQ        71,0,175:0/1:74
+chr16  3274307 .       G       T       68      .       DP=39;AF1=0.5;CI95=0.5,0.5;DP4=0,30,0,8;MQ=37;PV4=1,1,1,1       PL:GT:GQ        98,0,138:0/1:99
+chr16  5467292 .       G       C       37.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        69,6,0:1/1:49
+chr16  10079145        .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr16  11483702        .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:GT:GQ        40,6,0:1/1:49
+chr16  12038227        .       A       T       23      .       DP=47;AF1=0.5;CI95=0.5,0.5;DP4=0,22,0,23;MQ=32;PV4=1,4.4e-66,0.47,0.028 PL:GT:GQ        53,0,135:0/1:56
+chr16  21336880        .       G       C       55      .       DP=35;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,19;MQ=47;PV4=1,5.6e-21,1,1        PL:GT:GQ        85,0,121:0/1:88
+chr16  21980241        .       C       T       16.1    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=29 PL:GT:GQ        48,9,0:1/1:63
+chr16  23275383        .       C       G       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        44,6,0:1/1:49
+chr16  27546495        .       G       T       25      .       DP=35;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=43        PL:GT:GQ        57,9,0:1/1:63
+chr16  27700399        .       A       T       17.6    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=17 PL:GT:GQ        50,12,0:1/1:72
+chr16  28021935        .       A       G       18.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=23 PL:GT:GQ        51,15,0:1/1:75
+chr16  29070016        .       G       T       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:GT:GQ        40,6,0:1/1:49
+chr16  29478618        .       C       T       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=42 PL:GT:GQ        43,9,0:1/1:63
+chr16  29718140        .       C       T       46.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=31 PL:GT:GQ        79,15,0:1/1:75
+chr16  30700759        .       T       C       17.1    .       DP=14;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=14 PL:GT:GQ        50,42,0:1/1:99
+chr16  35139103        .       A       G       46.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37 PL:GT:GQ        79,12,0:1/1:72
+chr16  35473348        .       G       A       3.83    .       DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25        PL:GT:GQ        34,12,0:1/1:72
+chr16  36213667        .       A       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        73,6,0:1/1:49
+chr16  36705528        .       G       A       14.4    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=32 PL:GT:GQ        47,15,0:1/1:75
+chr16  43831353        .       C       T       69.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=42 PL:GT:GQ        102,12,0:1/1:72
+chr16  44715166        .       A       C       25      .       DP=18;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=32  PL:GT:GQ        58,24,0:1/1:96
+chr16  44957661        .       T       C       7.03    .       DP=23;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=18  PL:GT:GQ        39,21,0:1/1:84
+chr16  44958698        .       C       T       42.3    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:GT:GQ        75,15,0:1/1:75
+chr16  44959163        .       T       C       33.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:GT:GQ        66,12,0:1/1:72
+chr16  45167959        .       C       T       4.45    .       DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=24        PL:GT:GQ        35,12,0:1/1:72
+chr16  50254956        .       C       T       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=36 PL:GT:GQ        45,6,0:1/1:49
+chr16  52383122        .       A       C       46.5    .       DP=19;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=42        PL:GT:GQ        79,12,0:1/1:72
+chr16  55978159        .       C       T       10.7    .       DP=20;AF1=0.5336;CI95=0.5,1;DP4=2,0,5,0;MQ=35;PV4=1,0.038,1,0.059       PL:GT:GQ        40,0,9:0/1:12
+chr16  61358878        .       T       A       15.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32 PL:GT:GQ        47,6,0:1/1:49
+chr16  61392487        .       G       A       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=31 PL:GT:GQ        44,6,0:1/1:49
+chr16  61621603        .       G       T       6.59    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=22        PL:GT:GQ        38,12,0:1/1:72
+chr16  69120890        .       G       C       51.3    .       DP=36;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=42        PL:GT:GQ        84,15,0:1/1:75
+chr16  70778219        .       A       G       21.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=39 PL:GT:GQ        53,6,0:1/1:49
+chr16  71899519        .       T       C       40      .       DP=11;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=33 PL:GT:GQ        73,33,0:1/1:99
+chr16  72079251        .       A       G       11.3    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=41 PL:GT:GQ        43,9,0:1/1:63
+chr16  72093003        .       G       C       9.31    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr16  72672428        .       A       G       68      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:GT:GQ        100,9,0:1/1:63
+chr16  72864515        .       A       G       13.9    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=35 PL:GT:GQ        45,6,0:1/1:49
+chr16  72890560        .       G       A       47.1    .       DP=10;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,7;MQ=49;PV4=1,0.0019,0.0033,1   PL:GT:GQ        77,0,16:0/1:19
+chr16  73048929        .       A       G       6.29    .       DP=4;AF1=0.9966;CI95=0.5,1;DP4=1,0,2,0;MQ=27;PV4=1,1,1,0.33     PL:GT:GQ        34,1,0:1/1:23
+chr16  73177179        .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr16  73191468        .       C       T       69.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=40 PL:GT:GQ        102,12,0:1/1:72
+chr16  73367439        .       A       C       7.41    .       DP=36;AF1=1;CI95=0.5,1;DP4=0,2,0,13;MQ=26;PV4=1,1,0.027,1       PL:GT:GQ        37,4,0:1/1:45
+chr16  74259316        .       C       T       89.5    .       DP=13;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49        PL:GT:GQ        122,12,0:1/1:72
+chr16  75271450        .       C       G       6.99    .       DP=15;AF1=0.5015;CI95=0.5,0.5;DP4=0,1,0,3;MQ=44;PV4=1,0.065,0.31,1      PL:GT:GQ        36,0,22:0/1:25
+chr16  76199870        .       G       A       26      .       DP=14;AF1=0.5;CI95=0.5,0.5;DP4=8,0,6,0;MQ=47;PV4=1,1.2e-06,0.32,1       PL:GT:GQ        56,0,141:0/1:59
+chr16  77723692        .       A       G       89.5    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:GT:GQ        122,12,0:1/1:72
+chr17  165875  .       G       A       40.8    .       DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42        PL:GT:GQ        72,6,0:1/1:49
+chr17  1443809 .       C       G       9.31    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:GT:GQ        40,6,0:1/1:49
+chr17  1618253 .       C       T       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=39 PL:GT:GQ        54,9,0:1/1:63
+chr17  2815309 .       T       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        40,6,0:1/1:49
+chr17  3537486 .       T       G       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:GT:GQ        73,6,0:1/1:49
+chr17  3734367 .       C       A       23.5    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=36        PL:GT:GQ        56,12,0:1/1:72
+chr17  5634764 .       T       C       13      .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=35 PL:GT:GQ        44,6,0:1/1:49
+chr17  6408090 .       C       G       3.54    .       DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=40;PV4=1,1,0.36,1   PL:GT:GQ        31,0,66:0/1:34
+chr17  7089723 .       A       G       9.31    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:GT:GQ        40,6,0:1/1:49
+chr17  8731503 .       G       C       11.1    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:GT:GQ        42,6,0:1/1:49
+chr17  9282935 .       T       C,G     24.5    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=40        PL:GT:GQ        57,12,61,0,3,61:1/1:72
+chr17  17284831        .       T       C       29      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=25 PL:GT:GQ        61,9,0:1/1:63
+chr17  18439515        .       G       A       4.11    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25 PL:GT:GQ        34,9,0:1/1:63
+chr17  18602146        .       C       T       4.76    .       DP=20;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=16 PL:GT:GQ        36,33,0:1/1:99
+chr17  19427888        .       C       T       57      .       DP=104;AF1=0.5;CI95=0.5,0.5;DP4=45,0,29,0;MQ=39;PV4=1,2.2e-12,1,1       PL:GT:GQ        87,0,131:0/1:90
+chr17  19604159        .       T       C       9.31    .       DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:GT:GQ        40,6,0:1/1:49
+chr17  19610366        .       C       T       13      .       DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48        PL:GT:GQ        44,6,0:1/1:49
+chr17  20484706        .       C       G       51      .       DP=35;AF1=0.5001;CI95=0.5,0.5;DP4=0,11,0,21;MQ=21;PV4=1,0.39,0.49,1     PL:GT:GQ        81,0,36:0/1:39
+chr17  20555720        .       A       G       26.3    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=28 PL:GT:GQ        59,15,0:1/1:75
+chr17  24328984        .       A       C       15.4    .       DP=34;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=25        PL:GT:GQ        48,15,0:1/1:75
+chr17  26237090        .       G       A       41.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:GT:GQ        73,6,0:1/1:49
+chr17  28394766        .       C       A       13.9    .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=31 PL:GT:GQ        45,6,0:1/1:49
+chr17  31218277        .       A       G       3.62    .       DP=38;AF1=0.5161;CI95=0.5,0.5;DP4=0,1,0,2;MQ=38;PV4=1,0.26,1,1  PL:GT:GQ        31,0,12:0/1:15
+chr17  31254021        .       C       T       15.1    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=35        PL:GT:GQ        47,9,0:1/1:63
+chr17  32516798        .       G       A       37.8    .       DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:GT:GQ        69,6,0:1/1:49
+chr17  32600253        .       A       G       16.6    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25 PL:GT:GQ        49,12,0:1/1:72
+chr17  34255214        .       G       C       19.2    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=21 PL:GT:GQ        52,18,0:1/1:90
+chr17  34365900        .       T       C       93.1    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=38 PL:GT:GQ        126,18,0:1/1:90
+chr17  35380386        .       A       T       6.79    .       DP=44;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46        PL:GT:GQ        37,6,0:1/1:49
+chr17  41993344        .       C       T       64      .       DP=41;AF1=1;CI95=1,1;DP4=0,0,0,41;MQ=16 PL:GT:GQ        97,123,0:1/1:99
+chr17  42128201        .       A       G       4.13    .       DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,2;MQ=52;PV4=1,0.0041,1,1 PL:GT:GQ        32,0,62:0/1:35
+chr17  42984490        .       C       A       56      .       DP=33;AF1=0.5001;CI95=0.5,0.5;DP4=6,0,12,0;MQ=42;PV4=1,0.004,1,1        PL:GT:GQ        86,0,34:0/1:37
+chr17  43419457        .       G       A       99      .       DP=16;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=45 PL:GT:GQ        185,42,0:1/1:99
+chr17  43421225        .       A       G       65.1    .       DP=31;AF1=1;CI95=0.5,1;DP4=0,6,0,17;MQ=43;PV4=1,0.004,1,1       PL:GT:GQ        98,18,0:1/1:90
+chr17  45206897        .       G       A       22      .       DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:GT:GQ        54,9,0:1/1:63
+chr17  45381302        .       T       C       18.6    .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25 PL:GT:GQ        51,12,0:1/1:72
+chr17  45530812        .       C       A       3.54    .       DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=40;PV4=1,1,0.37,1   PL:GT:GQ        31,0,58:0/1:34
+chr17  50242633        .       G       A       44      .       DP=42;AF1=0.5;CI95=0.5,0.5;DP4=0,25,0,13;MQ=32;PV4=1,0.084,0.14,1       PL:GT:GQ        74,0,154:0/1:77
+chr17  51275317        .       G       A       14.9    .       DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=31        PL:GT:GQ        46,6,0:1/1:49
+chr17  52325530        .       C       T       29      .       DP=19;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=24 PL:GT:GQ        62,54,0:1/1:99
+chr17  52411748        .       T       G       18.6    .       DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=25 PL:GT:GQ        51,12,0:1/1:72
+chr17  53190746        .       C       G       62.1    .       DP=20;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=40        PL:GT:GQ        95,18,0:1/1:90
+chr17  58289916        .       T       C       18.2    .       DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=22 PL:GT:GQ        51,18,0:1/1:90
+chr17  59796875        .       C       T       42      .       DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=35 PL:GT:GQ        74,9,0:1/1:63