1 Index: samtools-0.1.17/Makefile
2 ===================================================================
3 --- samtools-0.1.17.orig/Makefile 2011-07-25 21:00:44.145494440 -0700
4 +++ samtools-0.1.17/Makefile 2011-07-25 21:09:46.265494761 -0700
7 -CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
8 +CFLAGS= -g -Wall -O2 -fPIC #-m64 #-arch ppc
9 DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1
10 KNETFILE_O= knetfile.o
11 LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
13 .PHONY:all lib clean cleanlocal
14 .PHONY:all-recur lib-recur clean-recur cleanlocal-recur install-recur
20 $(AR) -csru $@ $(LOBJS)
22 samtools:lib-recur $(AOBJS)
23 - $(CC) $(CFLAGS) -o $@ $(AOBJS) -Lbcftools $(LIBPATH) libbam.a -lbcf $(LIBCURSES) -lm -lz
24 + $(CC) $(CFLAGS) -o $@ $(AOBJS) -Lbcftools $(LIBPATH) -L. -lbam -lbcf $(LIBCURSES) -lm -lz
26 razip:razip.o razf.o $(KNETFILE_O)
27 $(CC) $(CFLAGS) -o $@ razf.o razip.o $(KNETFILE_O) -lz
29 libbam.1.dylib-local:$(LOBJS)
30 libtool -dynamic $(LOBJS) -o libbam.1.dylib -lc -lz
32 -libbam.so.1-local:$(LOBJS)
34 $(CC) -shared -Wl,-soname,libbam.so -o libbam.so.1 $(LOBJS) -lc -lz
38 @$(MAKE) cleanlocal; \