Imported Upstream version 0.1.15

[samtools.git] / bam.c

diff --git a/bam.c b/bam.c
index 521c1dda7897aa2b4489b103e1ee1a84129d6c63..a65aed5d551053a50952e95d58a763a77fadd06e 100644 (file)
--- a/bam.c
+++ b/bam.c
@@ -7,7 +7,7 @@
 #include "kstring.h"
 #include "sam_header.h"
 
-int bam_is_be = 0;
+int bam_is_be = 0, bam_verbose = 2;
 char *bam_flag2char_table = "pPuUrR12sfd\0\0\0\0\0";
 
 /**************************
@@ -79,7 +79,7 @@ bam_header_t *bam_header_read(bamFile fp)
                // with ESPIPE.  Suppress the error message in this case.
                if (errno != ESPIPE) perror("[bam_header_read] bgzf_check_EOF");
        }
-       else if (i == 0) fprintf(stderr, "[bam_header_read] EOF marker is absent.\n");
+       else if (i == 0) fprintf(stderr, "[bam_header_read] EOF marker is absent. The input is probably truncated.\n");
        // read "BAM1"
        magic_len = bam_read(fp, buf, 4);
        if (magic_len != 4 || strncmp(buf, "BAM\001", 4) != 0) {