{
bamFile in, out;
if (argc < 3) {
- fprintf(stderr, "Usage: samtools rmdup <input.srt.bam> <output.bam>\n");
+ fprintf(stderr, "Usage: samtools rmdup <input.srt.bam> <output.bam>\n\n");
+ fprintf(stderr, "Note: Picard is recommended for this task.\n");
return 1;
}
in = (strcmp(argv[1], "-") == 0)? bam_dopen(fileno(stdin), "r") : bam_open(argv[1], "r");