Merge commit 'upstream/0.1.13'

[samtools.git] / bcftools / prob1.h

diff --git a/bcftools/prob1.h b/bcftools/prob1.h
index 7158fe29f89bee73dda2f2bdc9426af038a363c6..b4f6a304ae49ff31f9ef9ae88db268cd3f01640e 100644 (file)
--- a/bcftools/prob1.h
+++ b/bcftools/prob1.h
@@ -8,7 +8,8 @@ typedef struct __bcf_p1aux_t bcf_p1aux_t;
 
 typedef struct {
        int rank0;
-       double f_em, f_exp, f_flat, p_ref;
+       double f_em, f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var;
+       double cil, cih;
        double pc[4];
        double g[3];
 } bcf_p1rst_t;
@@ -25,12 +26,13 @@ extern "C" {
        void bcf_p1_init_prior(bcf_p1aux_t *ma, int type, double theta);
        void bcf_p1_init_subprior(bcf_p1aux_t *ma, int type, double theta);
        void bcf_p1_destroy(bcf_p1aux_t *ma);
-       int bcf_p1_cal(bcf1_t *b, bcf_p1aux_t *ma, bcf_p1rst_t *rst);
+       int bcf_p1_cal(const bcf1_t *b, bcf_p1aux_t *ma, bcf_p1rst_t *rst);
        int bcf_p1_call_gt(const bcf_p1aux_t *ma, double f0, int k);
        void bcf_p1_dump_afs(bcf_p1aux_t *ma);
        int bcf_p1_read_prior(bcf_p1aux_t *ma, const char *fn);
        long double bcf_p1_cal_g3(bcf_p1aux_t *p1a, double g[3]);
        int bcf_p1_set_n1(bcf_p1aux_t *b, int n1);
+       void bcf_p1_set_folded(bcf_p1aux_t *p1a); // only effective when set_n1() is not called
 
 #ifdef __cplusplus
 }