Copyright notice bureaucracy.

[samtools.git] / debian / copyright

diff --git a/debian/copyright b/debian/copyright
index b0101dde70222583e8e7c739a44745649de33bb3..d72f918ecef194b25242096cb7e54961aff55bf1 100644 (file)
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,8 +1,10 @@
 Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
 
 Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
 

+

 Name      :  SAMtools
 Contact   :  SAMtools mailing list <samtools-help@lists.sourceforge.net>
 Name      :  SAMtools
 Contact   :  SAMtools mailing list <samtools-help@lists.sourceforge.net>

-Source    :  http://downloads.sourceforge.net/sourceforge/samtools/samtools-0.1.5c.tar.bz2
+Source    :  http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.7a.tar.bz2
+

 
 Copyright :  © 2008–2009, Genome Research Ltd.
 License   :  MIT
 
 Copyright :  © 2008–2009, Genome Research Ltd.
 License   :  MIT


@@ -25,14 +27,17 @@ License   :  MIT
        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
        THE SOFTWARE.
 
        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
        THE SOFTWARE.
 

+
+Files: misc/export2sam.pl
+Copyright :  © 2008–2009, Genome Research Ltd.
+Copyright :  © 2010 Illumina, Inc.
+License   :  MIT
+
+

 Files     :  bgzf.*, bgzip.c
 Copyright :  © 2008 Broad Institute / Massachusetts Institute of Technology
 License   :  MIT
 
 Files     :  bgzf.*, bgzip.c
 Copyright :  © 2008 Broad Institute / Massachusetts Institute of Technology
 License   :  MIT
 

-The license of the above files have been confirmed upstream and their headers
-will be corrected in the next release. See:
-http://samtools.svn.sourceforge.net/viewvc/samtools?view=rev&revision=441
-

 
 Files     :  razf.*
 Name      :  RAZF : Random Access compressed(Z) File
 
 Files     :  razf.*
 Name      :  RAZF : Random Access compressed(Z) File


@@ -62,27 +67,50 @@ License   :  Similar to NetBSD license.
 
 
 Files     :  misc/md5.*
 
 
 Files     :  misc/md5.*

-Name      :  MD5 Message Digest Algorithm
-Copyright :  © 1990, RSA Data Security, Inc.

 License   :
        
 License   :
        

-       License to copy and use this software is granted provided that   
-       it is identified as the "RSA Data Security, Inc. MD5 Message     
-       Digest Algorithm" in all material mentioning or referencing this 
-       software or this function.                                       
-                                                                        
-       License is also granted to make and use derivative works         
-       provided that such works are identified as "derived from the RSA 
-       Data Security, Inc. MD5 Message Digest Algorithm" in all         
-       material mentioning or referencing the derived work.             
-                                                                        
-       RSA Data Security, Inc. makes no representations concerning      
-       either the merchantability of this software or the suitability   
-       of this software for any particular purpose.  It is provided "as 
-       is" without express or implied warranty of any kind.             
-                                                                        
-       These notices must be retained in any copies of any part of this 
-       documentation and/or software.                                   
-
-The above source files for MD5 support will be replaced in the next SAMtools
-release by the public domain implementation of ‘http://www.fourmilab.ch/md5/’.
+       This code implements the MD5 message-digest algorithm.
+       The algorithm is due to Ron Rivest. This code was
+       written by Colin Plumb in 1993, no copyright is claimed.
+       This code is in the public domain; do with it what you wish.
+       
+       Equivalent code is available from RSA Data Security, Inc.
+       This code has been tested against that, and is equivalent,
+       except that you don't need to include two pages of legalese
+       with every copy.
+       
+       To compute the message digest of a chunk of bytes, declare an
+       MD5Context structure, pass it to MD5Init, call MD5Update as
+       needed on buffers full of bytes, and then call MD5Final, which
+       will fill a supplied 16-byte array with the digest.
+
+
+Files     :  win32/xcurses.h
+License   :  Public Domain
+       
+       This file is part of PDCurses (http://pdcurses.sourceforge.net/),
+       which is in the public domain.
+
+
+Files     :  win32/z*.h 
+Copyright :  © 1995-2005 Jean-loup Gailly and Mark Adler
+License   :  zlib
+
+       This software is provided 'as-is', without any express or implied
+       warranty.  In no event will the authors be held liable for any damages
+       arising from the use of this software.
+
+       Permission is granted to anyone to use this software for any purpose,
+       including commercial applications, and to alter it and redistribute it
+       freely, subject to the following restrictions:
+
+       1. The origin of this software must not be misrepresented; you must not
+          claim that you wrote the original software. If you use this software
+          in a product, an acknowledgment in the product documentation would be
+          appreciated but is not required.
+       2. Altered source versions must be plainly marked as such, and must not be
+          misrepresented as being the original software.
+       3. This notice may not be removed or altered from any source distribution.
+
+       Jean-loup Gailly        Mark Adler
+       jloup@gzip.org          madler@alumni.caltech.edu