woldlab.caltech.edu Git - samtools.git/commit

author	Charles Plessy <plessy@debian.org>
	Mon, 1 Nov 2010 09:45:04 +0000 (18:45 +0900)
committer	Charles Plessy <plessy@debian.org>
	Mon, 1 Nov 2010 09:45:04 +0000 (18:45 +0900)
commit	8d2494d1fb7cd0fa7c63be5ffba8dd1a11457522
tree	77202a7ccffdff41678426ed18db9839848af1b5	tree \| snapshot
parent	cb12a866906ec4ac644de0e658679261c82ab098	commit \| diff

Imported Upstream version 0.1.9

56 files changed:

ChangeLog		diff \| blob \| history
Makefile		diff \| blob \| history
NEWS		diff \| blob \| history
bam.c		diff \| blob \| history
bam.h		diff \| blob \| history
bam2bcf.c	[new file with mode: 0644]	blob
bam2bcf.h	[new file with mode: 0644]	blob
bam_index.c		diff \| blob \| history
bam_maqcns.c		diff \| blob \| history
bam_maqcns.h		diff \| blob \| history
bam_md.c		diff \| blob \| history
bam_pileup.c		diff \| blob \| history
bam_plcmd.c		diff \| blob \| history
bam_sort.c		diff \| blob \| history
bam_tview.c		diff \| blob \| history
bamtk.c		diff \| blob \| history
bcftools/Makefile	[new file with mode: 0644]	blob
bcftools/README	[new file with mode: 0644]	blob
bcftools/bcf-fix.pl	[new file with mode: 0755]	blob
bcftools/bcf.c	[new file with mode: 0644]	blob
bcftools/bcf.h	[new file with mode: 0644]	blob
bcftools/bcf.tex	[new file with mode: 0644]	blob
bcftools/bcf2qcall.c	[new file with mode: 0644]	blob
bcftools/bcftools.1	[new file with mode: 0644]	blob
bcftools/bcfutils.c	[new file with mode: 0644]	blob
bcftools/call1.c	[new file with mode: 0644]	blob
bcftools/fet.c	[new file with mode: 0644]	blob
bcftools/index.c	[new file with mode: 0644]	blob
bcftools/kfunc.c	[new file with mode: 0644]	blob
bcftools/ld.c	[new file with mode: 0644]	blob
bcftools/main.c	[new file with mode: 0644]	blob
bcftools/prob1.c	[new file with mode: 0644]	blob
bcftools/prob1.h	[new file with mode: 0644]	blob
bcftools/vcf.c	[new file with mode: 0644]	blob
bcftools/vcfutils.pl	[new file with mode: 0755]	blob
bgzf.c		diff \| blob \| history
bgzip.c		diff \| blob \| history
errmod.c	[new file with mode: 0644]	blob
errmod.h	[new file with mode: 0644]	blob
examples/Makefile		diff \| blob \| history
examples/toy.fa		diff \| blob \| history
examples/toy.sam		diff \| blob \| history
kaln.c		diff \| blob \| history
kaln.h		diff \| blob \| history
ksort.h		diff \| blob \| history
kstring.c		diff \| blob \| history
kstring.h		diff \| blob \| history
misc/HmmGlocal.java	[new file with mode: 0644]	blob
misc/Makefile		diff \| blob \| history
misc/samtools.pl		diff \| blob \| history
razip.c		diff \| blob \| history
sam_view.c		diff \| blob \| history
sample.c	[new file with mode: 0644]	blob
sample.h	[new file with mode: 0644]	blob
samtools.1		diff \| blob \| history
samtools.txt		diff \| blob \| history

woldlab customizations/backport of samtools package

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